Browse Element(s) Details


OsAffx.24070.1.S1_at

Description tigr:9630.m00172
TID=OsAffx.24070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0264010/11NBS-LRR disease resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24070.1.S1_at--40--10751Chr02:972891..972915 (25 bp)
TTGAAGGCAGTGTCCATTCTCGCTT
LOC_Os02g02640
OsAffx.24070.1.S1_at--739--7271Chr02:972919..972943 (25 bp)
GTGCCTCCCTTCTATTACGAAATTA
LOC_Os02g02640
OsAffx.24070.1.S1_at--257--6791Chr02:972979..973003 (25 bp)
GTTAGGATACTGCACAGCGCTGGTA
LOC_Os02g02640
OsAffx.24070.1.S1_at--1103--8211Chr02:973009..973033 (25 bp)
GGCAATTGACAGCTGCAAGTCGCTT
LOC_Os02g02640
OsAffx.24070.1.S1_at--71--4131Chr02:973029..973053 (25 bp)
CGCTTGCATCAATCGAGGGTTTCCA
LOC_Os02g02640
OsAffx.24070.1.S1_at--566--6891Chr02:973100..973124 (25 bp)
GTATACCCATGTCTGCAGCTTATGT
LOC_Os02g02640
OsAffx.24070.1.S1_at--483--4971Chr02:973139..973163 (25 bp)
GCATCTGACATCTTTTCTCAACTGG
LOC_Os02g02640
OsAffx.24070.1.S1_at--510--9811Chr02:973170..973194 (25 bp)
TAACGGTTGATGATGCCTCTGTCCT
LOC_Os02g02640
OsAffx.24070.1.S1_at--597--10271Chr02:973206..973230 (25 bp)
TTTGCAAACATCTCACGTCTCTACG
LOC_Os02g02640
OsAffx.24070.1.S1_at--88--1851Chr02:973228..973252 (25 bp)
ACGAGTCTTAGGATTACACCGGGAT
LOC_Os02g02640
OsAffx.24070.1.S1_at--127--2851NONE
AAGTCTATGGCCTCCAGAGCAAATT
NONE
Target Sequence 
TTGAAGGCAGTGTCCATTCTCGCTTTCTGTGCCTCCCTTCTATTACGAAATTAGACTTGTGGAATAGTCCAGATTTGAAG
TCTCTACAGTTAGGATACTGCACAGCGCTGGTAGATTTGGCAATTGACAGCTGCAAGTCGCTTGCATCAATCGAGGGTTT
CCAGTCCATTAGAAACCTTAGGTCCTTGAGAGTAGGTGACTCCCCCAGCGTATACCCATGTCTGCAGCTTATGTCGCAGC
AGCAAGGGGCATCTGACATCTTTTCTCAACTGGAAACTCTAACGGTTGATGATGCCTCTGTCCTTTCCGTGCCCCTTTGC
AAACATCTCACGTCTCTACGAGTCTTAGGATTACACCGGGATGGATATAGTGGCAAGTCTATGGCCTCCAGAGCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis