Browse Element(s) Details


Os.23222.1.S1_at

Description gb:CA764757
DB_XREF= gi:27546444
DB_XREF=AF53-Rpf_04_M23_T7_088.ab1
CLONE=C0001463
TID=Os.23222.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23222 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g026601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23222.1.S1_at--1155--1291Chr02:996774..996798 (25 bp)
AGATGTAACTTCATCTGGCCCTGCT
NONE
Os.23222.1.S1_at--953--9111Chr02:996795..996819 (25 bp)
TGCTGCAGCTGATCACGAGACGACA
NONE
Os.23222.1.S1_at--824--9691Chr02:996882..996906 (25 bp)
TCACTCACCGCTGCATAGGCAGAAG
NONE
Os.23222.1.S1_at--288--2811Chr02:996912..996936 (25 bp)
AAGATCGGGTCAATCACTTGCTCTG
NONE
Os.23222.1.S1_at--50--9692Chr02:996925..996949 (25 bp)
TCACTTGCTCTGCACAAGCATTGTG
NONE
Os.23222.1.S1_at--205--651Chr02:996983..997007 (25 bp)
ATGCATGGACACCTGTGAGCAGCTC
NONE
Os.23222.1.S1_at--1157--7371Chr02:996997..997021 (25 bp)
GTGAGCAGCTCATGTGATAGCCTAT
NONE
Os.23222.1.S1_at--459--6491Chr02:997012..997036 (25 bp)
GATAGCCTATAATCATGCCACGCCG
NONE
Os.23222.1.S1_at--636--10351Chr02:997050..997074 (25 bp)
TTTATATCTCTATGCGTCTGCTGGT
NONE
Os.23222.1.S1_at--698--7171Chr02:997065..997089 (25 bp)
GTCTGCTGGTTTTTGTTCCAGTTCA
NONE
Os.23222.1.S1_at--623--6691Chr02:997079..997103 (25 bp)
GTTCCAGTTCATATTTTCAGAAGCC
NONE
Target Sequence 
AGATGTAACTTCATCTGGCCCTGCTGCAGCTGATCACGAGACGACAGTATGAGCATGCAGCAGAGAGCAGCTGCACCTGC
TCTCTTGCCTTCTCTCTCTCAGCTCCTCTCACTCACCGCTGCATAGGCAGAAGATGTTAAGATCGGGTCAATCACTTGCT
CTGCACAAGCATTGTGCAAATTGAGTTGACAAATGCAGATGAAAACGAAATGCATGGACACCTGTGAGCAGCTCATGTGA
TAGCCTATAATCATGCCACGCCGCTGCCAGTGTTANTTTATATCTCTATGCGTCTGCTGGTTTTTGTTCCAGTTCATATT
TTCAGAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis