Browse Element(s) Details


Os.9016.1.S1_x_at

Description gb:CA762763
DB_XREF= gi:25806802
DB_XREF=BR060002A10G11.ab1
CLONE=BR060002A10G11.ab1
TID=Os.9016.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9016 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1556011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g437509/11retrotransposon, putative, centromere-specific, expressed
LOC_Os01g467202/11Protein kinase domain containing protein, expressed
LOC_Os06g274002/11hypothetical protein
LOC_Os11g230801/11expressed protein
LOC_Os05g262501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15540Os.49283.1.S1_at11/112+8714118..8715036expressed protein
LOC_Os02g15550Os.28095.1.S1_at11/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15550Os.21831.1.S1_at1/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15560Os.9016.1.S1_x_at11/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15560OsAffx.26273.1.S1_at6/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15570OsAffx.2625.1.S1_at11/112+8741014..8742325hypothetical protein
LOC_Os02g15580Os.5666.1.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15580Os.5666.2.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9016.1.S1_x_at--168--55321Chr12:5988429..5988453 (25 bp)
GAAAAGCTTTGCCATGACTAAGCTA
NONE
Os.9016.1.S1_x_at--333--31321Chr10:845301..845325 (25 bp)
AATTCAAGATTTTACTAAATGCTGC
NONE
Os.9016.1.S1_x_at--812--1112Chr10:845302..845326 (25 bp)
ATTCAAGATTTTACTAAATGCTGCT
NONE
Os.9016.1.S1_x_at--580--3579Chr10:845328..845352 (25 bp)
CATTTAAAACATCAGGCTTTCTATT
NONE
Os.9016.1.S1_x_at--194--199Chr10:845329..845353 (25 bp)
ATTTAAAACATCAGGCTTTCTATTT
NONE
Os.9016.1.S1_x_at--949--10299Chr10:845330..845354 (25 bp)
TTTAAAACATCAGGCTTTCTATTTC
NONE
Os.9016.1.S1_x_at--554--98312Chr10:845332..845356 (25 bp)
TAAAACATCAGGCTTTCTATTTCTA
NONE
Os.9016.1.S1_x_at--43--24312Chr10:845333..845357 (25 bp)
AAAACATCAGGCTTTCTATTTCTAT
NONE
Os.9016.1.S1_x_at--1086--2399Chr10:845334..845358 (25 bp)
AAACATCAGGCTTTCTATTTCTATA
NONE
Os.9016.1.S1_x_at--521--31712Chr10:845479..845503 (25 bp)
CAGAGTTAAATTGAAGTTCTTGCCG
NONE
Os.9016.1.S1_x_at--1003--310Chr10:845488..845512 (25 bp)
ATTGAAGTTCTTGCCGAAGCCAGGA
NONE
Target Sequence 
GAAAAGCTTTGCCATGACTAAGCTAATGAATATTGGCATGTCATGGATTGCGGGTAAAGCGTACATTTACTGCAGTAAAN
TAAACNTGAATCTATTCGAATAGCCGTGCTCACGGAATTGAGTATCGGGACTCATATGGTACTTTGGTTAGAAACCTAAT
TCAAGATTTTACTAAATGCTGCTNCATTTAAAACATCAGGCTTTCTATTTCTATANTCTCTGCCTTCTGCAAGTAATNGT
AATCCTACTCAAATATTACNTTTTNATACATNCATTATTGAATATAATAGCTTGCTGAGTACGTTGTACTCACCCTTGCT
TCAANCNCNNTTTTTCCAGAGTTAAATTGAAGTTCTTGCCGAAGCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9016.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis