Browse Element(s) Details


Os.49283.1.S1_at

Description gb:AK063627.1
DB_XREF= gi:32973645
TID=Os.49283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F03, full insert sequence.
FL= gb:AK063627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1554011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15510OsAffx.12056.1.S1_at10/112+8694018..8697791BED zinc finger family protein
LOC_Os02g15520OsAffx.12057.1.S1_at11/112+8700658..8702514hAT family dimerisation domain containing protein, expressed
LOC_Os02g15530OsAffx.2624.1.S1_at11/112+8706393..8707266hypothetical protein
LOC_Os02g15540Os.49283.1.S1_at11/112+8714118..8715036expressed protein
LOC_Os02g15550Os.28095.1.S1_at11/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15550Os.21831.1.S1_at1/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15560Os.9016.1.S1_x_at11/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15560OsAffx.26273.1.S1_at6/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49283.1.S1_at--776--2791Chr02:8714796..8714820 (25 bp)
AAGATGGTGCTGACGAAAGCCGAGC
LOC_Os02g15540
Os.49283.1.S1_at--1044--951Chr02:8714604..8714750 (25 bp)
AGGACGTGCTCCAGCCTGGAGAGCA
LOC_Os02g15540
Os.49283.1.S1_at--309--6131Chr02:8714574..8714598 (25 bp)
GAGGGCCCCGAGATGAGCTCCTTCA
LOC_Os02g15540
Os.49283.1.S1_at--904--4891Chr02:8714549..8714573 (25 bp)
GCTTCGACTACTGAACTGATCGCCA
LOC_Os02g15540
Os.49283.1.S1_at--110--6391Chr02:8714532..8714556 (25 bp)
GATCGCCAGTGTGTCAAAGAGCTAG
LOC_Os02g15540
Os.49283.1.S1_at--941--5911Chr02:8714514..8714538 (25 bp)
GAGCTAGAGCCTTGTTAATTACGTT
LOC_Os02g15540
Os.49283.1.S1_at--252--5951Chr02:8714466..8714490 (25 bp)
GAGCACGGTAATTTTTCTTGTTAGC
LOC_Os02g15540
Os.49283.1.S1_at--83--8791Chr02:8714448..8714472 (25 bp)
TGTTAGCAGTGCATGGCCGTCTTTG
LOC_Os02g15540
Os.49283.1.S1_at--248--171Chr02:8714379..8714403 (25 bp)
ATTTAACTCTTGTCCTAATGGCTAG
LOC_Os02g15540
Os.49283.1.S1_at--233--3151Chr02:8714318..8714342 (25 bp)
AATTAATCTAGGTCGGCTCCTTGCT
LOC_Os02g15540
Os.49283.1.S1_at--382--4771Chr02:8714296..8714320 (25 bp)
GCTGCTTTTGAGTTAATCTTTGCTT
LOC_Os02g15540
Target Sequence 
AAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT
CCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAA
GAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCAT
GGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAG
AGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTG
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis