Browse Element(s) Details


OsAffx.12057.1.S1_at

Description tigr:9630.m01453
TID=OsAffx.12057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=281-3511
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1552011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15500OsAffx.12055.2.S1_at11/112+8679388..8680777expressed protein
LOC_Os02g15510OsAffx.12056.1.S1_at10/112+8694018..8697791BED zinc finger family protein
LOC_Os02g15520OsAffx.12057.1.S1_at11/112+8700658..8702514hAT family dimerisation domain containing protein, expressed
LOC_Os02g15530OsAffx.2624.1.S1_at11/112+8706393..8707266hypothetical protein
LOC_Os02g15540Os.49283.1.S1_at11/112+8714118..8715036expressed protein
LOC_Os02g15550Os.28095.1.S1_at11/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15550Os.21831.1.S1_at1/112+8726613..8730643Spermidine synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12057.1.S1_at--489--3291Chr02:8701180..8701204 (25 bp)
CACACTTGACCGCTTTCTGTTAAAG
LOC_Os02g15520
OsAffx.12057.1.S1_at--982--4951Chr02:8701139..8701163 (25 bp)
GCATACCACTTATTCTAGATCCGAG
LOC_Os02g15520
OsAffx.12057.1.S1_at--1033--2731Chr02:8701062..8701086 (25 bp)
AAGAATGCTCCCTCTGTAGATCTAG
LOC_Os02g15520
OsAffx.12057.1.S1_at--479--2251Chr02:8701020..8701044 (25 bp)
AAATTTCGTGAGCTCTTCACAGAGT
LOC_Os02g15520
OsAffx.12057.1.S1_at--766--7011Chr02:8700887..8700911 (25 bp)
GTACTTTGCAACTCACAGAGCAGGG
LOC_Os02g15520
OsAffx.12057.1.S1_at--887--3411Chr02:8700872..8700896 (25 bp)
CAGAGCAGGGCAATACGAGTTCACA
LOC_Os02g15520
OsAffx.12057.1.S1_at--685--6011Chr02:8700838..8700862 (25 bp)
GAGAGAACTCGAAGCCTATCTGCAA
LOC_Os02g15520
OsAffx.12057.1.S1_at--1095--10151Chr02:8700822..8700846 (25 bp)
TATCTGCAAGATGAAACCGTCCCTC
LOC_Os02g15520
OsAffx.12057.1.S1_at--487--5551Chr02:8700810..8700834 (25 bp)
GAAACCGTCCCTCTGGATCAAGTGG
LOC_Os02g15520
OsAffx.12057.1.S1_at--299--2571Chr02:8700756..8700780 (25 bp)
AACTGTGGCAGGTATCCCACGGTAG
LOC_Os02g15520
OsAffx.12057.1.S1_at--105--1351Chr02:8700720..8700744 (25 bp)
AGAGATTTTCTAGCCATTCCAACTT
LOC_Os02g15520
Target Sequence 
CACACTTGACCGCTTTCTGTTAAAGTCATATTTGTTACTAAGCATACCACTTATTCTAGATCCGAGATATAAGCTCGTCT
ATGTTGAAAACTTACTCAAGAATTTTCAGAGCATTCTTAAGAATGCTCCCTCTGTAGATCTAGTTTCTAAGGTAGGAGAA
AAATTTCGTGAGCTCTTCACAGAGTACAAAACACAAGGCATTGAAACAGATTACAATAATGAGAGCAATGCCACAGAGCA
TGCTAATCATATCCATGAAATGGATGTGGATCCATCAATACAAGGGAATGGGAGTACTTTGCAACTCACAGAGCAGGGCA
ATACGAGTTCACAGGAACACATGAGAGAACTCGAAGCCTATCTGCAAGATGAAACCGTCCCTCTGGATCAAGTGGATTTC
GATATTCTCAAGTGGTGGAAGAACAACTGTGGCAGGTATCCCACGGTAGCCAGGATTGCAAGAGATTTTCTAGCCATTCC
AACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis