Browse Element(s) Details


OsAffx.2624.1.S1_at

Description tigr:9630.m01454
TID=OsAffx.2624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15510OsAffx.12056.1.S1_at10/112+8694018..8697791BED zinc finger family protein
LOC_Os02g15520OsAffx.12057.1.S1_at11/112+8700658..8702514hAT family dimerisation domain containing protein, expressed
LOC_Os02g15530OsAffx.2624.1.S1_at11/112+8706393..8707266hypothetical protein
LOC_Os02g15540Os.49283.1.S1_at11/112+8714118..8715036expressed protein
LOC_Os02g15550Os.28095.1.S1_at11/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15550Os.21831.1.S1_at1/112+8726613..8730643Spermidine synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2624.1.S1_at--303--1751Chr02:8707165..8707189 (25 bp)
ACCTAAATTAGGAGCGGAGCTGGAT
LOC_Os02g15530
OsAffx.2624.1.S1_at--519--3711Chr02:8706572..8707048 (25 bp)
CTAGAAAGTGCCACGTCAGCTGAAA
LOC_Os02g15530
OsAffx.2624.1.S1_at--279--5551Chr02:8706551..8706575 (25 bp)
GAAATCATTATTCAAACCACCTTGG
LOC_Os02g15530
OsAffx.2624.1.S1_at--384--131Chr02:8706542..8706566 (25 bp)
ATTCAAACCACCTTGGAACTACTGG
LOC_Os02g15530
OsAffx.2624.1.S1_at--113--8531Chr02:8706529..8706553 (25 bp)
TGGAACTACTGGTTTTGGGTGTTGA
LOC_Os02g15530
OsAffx.2624.1.S1_at--135--255Chr05:22376338..22376359 (22 bp)
ATATCTGATATTGCGGTTGAAGGGC
NONE
OsAffx.2624.1.S1_at--778--10211Chr02:8706486..8706510 (25 bp)
TATTGCGGTTGAAGGGCGAATGCCA
LOC_Os02g15530
OsAffx.2624.1.S1_at--1037--8371Chr02:8706472..8706496 (25 bp)
GGCGAATGCCAAACTTAGCGATATT
LOC_Os02g15530
OsAffx.2624.1.S1_at--671--2371Chr02:8706462..8706486 (25 bp)
AAACTTAGCGATATTGAGGGACCTA
LOC_Os02g15530
OsAffx.2624.1.S1_at--456--111Chr02:8706428..8706452 (25 bp)
ATTCTGGCTCAGATTGTGCTTGGGC
LOC_Os02g15530
OsAffx.2624.1.S1_at--878--8311Chr02:8706423..8706447 (25 bp)
GGCTCAGATTGTGCTTGGGCTGAAA
LOC_Os02g15530
Target Sequence 
ACCTAAATTAGGAGCGGAGCTGGATGAAGCTCTCTCACAAAATGAACTAGAAAGTGCCACGTCAGCTGAAATCATTATTC
AAACCACCTTGGAACTACTGGTTTTGGGTGTTGAGGGATGTGTCATATCTGATATTGCGGTTGAAGGGCGAATGCCAAAC
TTAGCGATATTGAGGGACCTAAGTGAACTTATTCTGGCTCAGATTGTGCTTGGGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis