Browse Element(s) Details


OsAffx.15896.1.S1_at

Description tigr:9634.m04113
TID=OsAffx.15896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4263010/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42580Os.47463.1.S1_x_at4/116+25606592..25608177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42580Os.14491.2.S1_x_at3/116+25606592..25608177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42590NANA6+25610071..25615096retrotransposon protein, putative, unclassified
LOC_Os06g42600NANA6+25616067..25618954retrotransposon protein, putative, unclassified
LOC_Os06g42610Os.27544.1.A1_at4/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.10711.1.S1_x_at3/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.30695.3.S1_x_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.10711.1.S1_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.30695.4.S1_x_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.30695.2.S1_x_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42620OsAffx.15895.1.S1_at11/116+25627959..25628810hypothetical protein
LOC_Os06g42630OsAffx.15896.1.S1_at10/116+25632146..25635385B3 DNA binding domain containing protein
LOC_Os06g42640Os.49730.1.S1_at11/116+25640469..25644229transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g42650NANA6+25644545..25647548hypothetical protein
LOC_Os06g42660Os.55280.1.S1_at11/116+25654527..25655227expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15896.1.S1_at--9--4831Chr06:25633793..25633817 (25 bp)
GCTCATGATCTCTCCGAAGGCAACA
LOC_Os06g42630
OsAffx.15896.1.S1_at--52--2511Chr06:25633772..25633796 (25 bp)
AACATCCTGCTGTTCCGGTATGAAG
LOC_Os06g42630
OsAffx.15896.1.S1_at--652--6751Chr06:25633737..25633761 (25 bp)
GTTCACGGTTGAGGTGTTCCTACAG
LOC_Os06g42630
OsAffx.15896.1.S1_at--263--6691Chr06:25633722..25633746 (25 bp)
GTTCCTACAGAACGGCTGCCTGAAG
LOC_Os06g42630
OsAffx.15896.1.S1_at--581--2571Chr06:25633689..25633713 (25 bp)
AACGGCAGCGCTGTACTTAACTGAT
LOC_Os06g42630
OsAffx.15896.1.S1_at--654--6611Chr06:25633540..25633564 (25 bp)
GTTGGAGTTTCACCTGTCAAGCGGA
LOC_Os06g42630
OsAffx.15896.1.S1_at--198--9791Chr06:25633463..25633487 (25 bp)
TAGGGCTTCCCCAATTTCCGTGAAG
LOC_Os06g42630
OsAffx.15896.1.S1_at--935--6871NONE
GTATTCATAGCCTACTTTCTGTGAG
NONE
OsAffx.15896.1.S1_at--33--1331Chr06:25632675..25632699 (25 bp)
AGAGGCACCTTTTGCTCTCAAATTG
LOC_Os06g42630
OsAffx.15896.1.S1_at--417--31Chr06:25632654..25632678 (25 bp)
ATTGGTCTGCTAGAAGCCTGTGCGA
LOC_Os06g42630
OsAffx.15896.1.S1_at--710--2911Chr06:25632602..25632626 (25 bp)
AAGGATCTTGGCGAGTGGCTTTCAA
LOC_Os06g42630
Target Sequence 
GCTCATGATCTCTCCGAAGGCAACATCCTGCTGTTCCGGTATGAAGGTAACATGGTGTTCACGGTTGAGGTGTTCCTACA
GAACGGCTGCCTGAAGGAGTACAAAACGGCAGCGCTGTACTTAACTGATGGTACCGAAGGACCGAGCAATGCGCCTCAAC
AAAGTGCAGCAAAAGTTGGAGTTTCACCTGTCAAGCGGAAAAGGACGCGAAGAATTGAGGGTACATGCTTAGAGGGACCA
AACAGGAAATCTAGGGCTTCCCCAATTTCCGTGAAGGTTGAACCACATAAGAAACATGTCAGCATTGTGTCACAGAATTC
ATTCACAAAGGAAATGACGGCCTATAGTATTCATAGCCTACTTTCTGTGAGAGGCACCTTTTGCTCTCAAATTGGTCTGC
TAGAAGCCTGTGCGATCACACTGAAGATATCCATGAAGAAAAAAGGATCTTGGCGAGTGGCTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis