Browse Element(s) Details


Os.47907.1.S1_at

Description gb:AK105783.1
DB_XREF= gi:32990992
TID=Os.47907.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G07, full insert sequence.
FL= gb:AK119530.1 gb:AK105966.1 gb:AK105783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2544010/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g254902/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g253801/11Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g312001/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os04g259701/11Cytokinin-O-glucosyltransferase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25410Os.18646.1.S1_at11/114+14693817..14697356pentatricopeptide, putative, expressed
LOC_Os04g25420OsAffx.3893.1.S1_at11/114+14713747..14714228hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_x_at10/114+14715768..14716963hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_at8/114+14715768..14716963hypothetical protein
LOC_Os04g25440Os.47907.1.S1_at10/114+14717790..14719616UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g25454Os.47463.1.S1_x_at5/114+14722174..14734758transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g25454Os.14491.2.S1_x_at5/114+14722174..14734758transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g25470NANA4+14737562..14745131retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47907.1.S1_at--612--1535Chr08:19161687..19161711 (25 bp)
AGCATGCTGACGACGTGGTGCCCGC
LOC_Os08g31200
Os.47907.1.S1_at--813--5851Chr04:14718163..14718187 (25 bp)
GACCAACTGCAGGTACAAGCGCACG
LOC_Os04g25440
Os.47907.1.S1_at--546--7551Chr04:14717987..14718011 (25 bp)
GTGGCCGGTCCGTGCACAACATCGA
LOC_Os04g25440
Os.47907.1.S1_at--641--3971Chr04:14717982..14718006 (25 bp)
CGGTCCGTGCACAACATCGATAGGC
LOC_Os04g25440
Os.47907.1.S1_at--569--4871Chr04:14717913..14717937 (25 bp)
GCTATATTTGTGCATTTTGCTTAAA
LOC_Os04g25440
Os.47907.1.S1_at--1114--3111Chr04:14717887..14717911 (25 bp)
AATTATTACACGGAGGACGCACACG
LOC_Os04g25440
Os.47907.1.S1_at--222--8111Chr04:14717873..14717897 (25 bp)
GGACGCACACGTAACAGTAACACAC
LOC_Os04g25440
Os.47907.1.S1_at--1124--7031Chr04:14717857..14717881 (25 bp)
GTAACACACCAGAATAAGTCGGAAG
LOC_Os04g25440
Os.47907.1.S1_at--188--8691Chr04:14717816..14717840 (25 bp)
TGTGATGCTGGTTCTGTGGTACACT
LOC_Os04g25440
Os.47907.1.S1_at--1079--10593Chr08:19162481..19162500 (20 bp)
TTCTGTGGTACACTTGCCTCCATGA
NONE
Os.47907.1.S1_at--182--4471Chr04:14717790..14717814 (25 bp)
GCCTCCATGACTTGACACTTGACAG
NONE
Target Sequence 
AGCATGCTGACGACGTGGTGCCCGCAGGCGGAGGTGCTGGAGCACGAGGCGGTGGGGGTGTTCCTCACCCACTCCGGCTG
GAACTCGACGCTGGAGAGCATCGCCGGCGGCGTGCCGATGGTGTGCTGGCCGTTCTTCGCCGAGCAGCAGACCAACTGCA
GGTACAAGCGCACGGAGTGGGGGATCGGGGCGGAGATCCCCGACGACGTGCGGCGCGGCGAGGTGGAGGCGCTGATACGG
GAGGCCATGGACGGGGAGAAGGGGAGGGAGATGCGGCGGCGCGTGGCGGAGCTCAGGGAGAGCGCCGTCGCGGCGGCGAA
GCCCGGTGGCCGGTCCGTGCACAACATCGATAGGCTCATCGACGAGGTGCTCATGGCTTGAGAAATAATATGTATTTTTG
CTATATTTGTGCATTTTGCTTAAAGAATTATTACACGGAGGACGCACACGTAACAGTAACACACCAGAATAAGTCGGAAG
GTTCTATGTTNGTCATTGTGATGCTGGTTCTGTGGTACACTTGCCTCCATGACTTGACACTTGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis