Browse Element(s) Details


OsAffx.11939.1.S1_at

Description tigr:9630.m00783
TID=OsAffx.11939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g082506/11hypothetical protein
LOC_Os02g082405/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08230Os.4769.1.S1_at11/112+4355059..4362385Gl1 protein, putative, expressed
LOC_Os02g08240OsAffx.11939.1.S1_at5/112+4376785..4380320Protein kinase domain containing protein, expressed
LOC_Os02g08250OsAffx.11939.1.S1_at6/112+4380623..4381918hypothetical protein
LOC_Os02g08250OsAffx.25665.1.S1_at1/112+4380623..4381918hypothetical protein
LOC_Os02g08260Os.47991.1.S1_at10/112+4384185..4388025metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os02g08270Os.49453.1.S1_at10/112+4390147..4393561glutamine amidotransferase class-I family protein, expressed
LOC_Os02g08280Os.47463.1.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08280Os.14491.2.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11939.1.S1_at--291--2311Chr02:4379827..4379933 (25 bp)
AAAGGCACAAGCTGCACTGTACCCA
LOC_Os02g08240
OsAffx.11939.1.S1_at--249--1611Chr02:4379836..4379942 (25 bp)
AGCTGCACTGTACCCAGATGAGAAT
LOC_Os02g08240
OsAffx.11939.1.S1_at--466--9891Chr02:4379987..4380011 (25 bp)
TACTATTTGTGAAAGTGCTCCCATA
LOC_Os02g08240
OsAffx.11939.1.S1_at--189--1131Chr02:4380000..4380024 (25 bp)
AGTGCTCCCATACATGACGTTCAAT
LOC_Os02g08240
OsAffx.11939.1.S1_at--768--5751Chr02:4380015..4380039 (25 bp)
GACGTTCAATCACGAGATTACTCTA
LOC_Os02g08240
OsAffx.11939.1.S1_at--294--6131Chr02:4380856..4380880 (25 bp)
GAGTGGTTTACACACATTAGAGCAA
LOC_Os02g08250
OsAffx.11939.1.S1_at--873--5211Chr02:4380929..4380953 (25 bp)
GAATATCTTAAATCGGCCATTCAGA
LOC_Os02g08250
OsAffx.11939.1.S1_at--682--6611Chr02:4381540..4381564 (25 bp)
GTTGGAAGTGGCTACACCACGAGAA
LOC_Os02g08250
OsAffx.11939.1.S1_at--41--5891Chr02:4381595..4381732 (25 bp)
GAGCGAATGCTCCATGATAGCCAAG
LOC_Os02g08250
OsAffx.11939.1.S1_at--783--8631Chr02:4381773..4381797 (25 bp)
TGTCCTAAAATTATACTTCCCAGAG
LOC_Os02g08250
OsAffx.11939.1.S1_at--455--8071Chr02:4381863..4381887 (25 bp)
GGAGCAATGTCATGCCCACAGCTAC
LOC_Os02g08250
Target Sequence 
AAAGGCACAAGCTGCACTGTACCCAGATGAGAATGATGGCGGCGAAGATGAGTATTTGCGTTTTCTTTTTGAACTTGATA
CTATTTGTGAAAGTGCTCCCATACATGACGTTCAATCACGAGATTACTCTAAAAATGAAAATGAGAAGTATAAATTTTGG
AGTGGTTTACACACATTAGAGCAAGTATCAAATTGCAAGGACTTTGATGAATATCTTAAATCGGCCATTCAGAAAGGCCG
TTTTAAAGTGACGGTAGAAGGTGCTGAGGTTGAGAAGTTGGAAGTGGCTACACCACGAGAAAAGGAATTATTAGAACGGA
TTGCTAGTTTGGAGCGAATGCTCCATGATAGCCAAGAGGAGGTTCAGAGGCTTAGAGAAAAGGGTAATTGTAATTTTGTC
CTAAAATTATACTTCCCAGAGATTAAGAGAGATAAAAGGAGCAATGTCATGCCCACAGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis