Browse Element(s) Details


Os.4769.1.S1_at

Description gb:AK066569.1
DB_XREF= gi:32976587
TID=Os.4769.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070P03, full insert sequence.
FL= gb:AK060909.1 gb:AK066569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0823011/11Gl1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein
LOC_Os02g08220Os.15780.1.S1_at11/112+4350869..4351990expressed protein
LOC_Os02g08230Os.4769.1.S1_at11/112+4355059..4362385Gl1 protein, putative, expressed
LOC_Os02g08240OsAffx.11939.1.S1_at5/112+4376785..4380320Protein kinase domain containing protein, expressed
LOC_Os02g08250OsAffx.11939.1.S1_at6/112+4380623..4381918hypothetical protein
LOC_Os02g08250OsAffx.25665.1.S1_at1/112+4380623..4381918hypothetical protein
LOC_Os02g08260Os.47991.1.S1_at10/112+4384185..4388025metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4769.1.S1_at--174--6111Chr02:4356328..4356513 (25 bp)
GAGTCCTGATGTTGACATTGTCGTC
LOC_Os02g08230
Os.4769.1.S1_at--590--3571Chr02:4356313..4356337 (25 bp)
CATTGTCGTCGGAGAGGTTTCTGAA
LOC_Os02g08230
Os.4769.1.S1_at--67--5391Chr02:4356278..4356302 (25 bp)
GAAGCACCGGCAGAGTTCCAGCAGT
LOC_Os02g08230
Os.4769.1.S1_at--39--1351Chr02:4356267..4356291 (25 bp)
AGAGTTCCAGCAGTACCTCGTGCAG
LOC_Os02g08230
Os.4769.1.S1_at--14--2851Chr02:4356236..4356260 (25 bp)
AAGTACCAGCCTGCACAAAACTGCA
LOC_Os02g08230
Os.4769.1.S1_at--774--3291Chr02:4355737..4356247 (25 bp)
CACAAAACTGCAAGACGTGGCTGGT
LOC_Os02g08230
Os.4769.1.S1_at--1041--6691Chr02:4355628..4355652 (25 bp)
GTTCCGGCGAGACTGCACCTACGGC
LOC_Os02g08230
Os.4769.1.S1_at--291--9451Chr02:4355352..4355587 (25 bp)
TCGGCTACTGCGAGTACACGATGGA
LOC_Os02g08230
Os.4769.1.S1_at--752--5411Chr02:4355158..4355182 (25 bp)
GAAGCCAACGAGAACGGCCGGCGAT
LOC_Os02g08230
Os.4769.1.S1_at--368--2571Chr02:4355146..4355170 (25 bp)
AACGGCCGGCGATCTTGTGGGATTT
LOC_Os02g08230
Os.4769.1.S1_at--165--6531Chr02:4355082..4355106 (25 bp)
GATTTGCCGTGGGATTTAAATTAAT
LOC_Os02g08230
Target Sequence 
GAGTCCTGATGTTGACATTGTCGTCGGAGAGGTTTCTGAAGATTCAGAGGGAAGCACCGGCAGAGTTCCAGCAGTACCTC
GTGCAGGTCACCAAGTACCAGCCTGCACAAAACTGCAAGACGTGGCTGGTGGGGAAGTNGCTGTCGCCGAGGGAGCAGAG
GTGGGCGCCGGCGGGGACACACTTNCCACCAGTTCGTGGTGCCGCCGATCATCGGGTTCCGGCGAGACTGCACCTACGGC
AAGCTCGCCGCCATGAGGCTCCCCAAGGACGTCCAGGGCCTCGGCTACTGCGAGTACACGATGGAACGCGGGGTGGTGCA
CGCGTGCCACGCCGGCGGCGTGGTGCACTTCCTGGAAGGGTGGGAGCACCACGAGGTGGGCGCCATCGACGTCGACCGGA
TCGACGTCGTCTGGAAGGCGGCGCTCAAGCACGGCCTCACGCCGGCGTGACCGCCGCCGCCGGAGGCCAGCGGCGAAGCC
AACGAGAACGGCCGGCGATCTTGTGGGATTTGGTGTGCTGTAAGATAGAAGAAATGTACGAGAAAAAAACGATTTGCCGT
GGGATTTAAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis