Browse Element(s) Details


Os.6022.1.S1_at

Description gb:AK102240.1
DB_XREF= gi:32987449
TID=Os.6022.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088C24, full insert sequence.
FL= gb:AK102240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0819010/11Protein CYPRO4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein
LOC_Os02g08220Os.15780.1.S1_at11/112+4350869..4351990expressed protein
LOC_Os02g08230Os.4769.1.S1_at11/112+4355059..4362385Gl1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6022.1.S1_at--6--10591NONE
TTCTCATGGGTGACCGAGAACGGGA
NONE
Os.6022.1.S1_at--812--7492Chr03:19308101..19308278 (25 bp)
GTGGTGTGGAACTTCCTCCAGGTGA
NONE
Os.6022.1.S1_at--1004--7351Chr02:4335075..4335099 (25 bp)
GTGAAGAACAGCCACCACGAGTGCT
LOC_Os02g08190
Os.6022.1.S1_at--65--671Chr02:4334910..4334934 (25 bp)
ATGAAGGTCACCTCCTTCAGCATCT
LOC_Os02g08190
Os.6022.1.S1_at--804--3791Chr02:4334868..4334892 (25 bp)
CTCGCCTTTCTGCTACGACATTTGG
LOC_Os02g08190
Os.6022.1.S1_at--318--10811Chr02:4334781..4334805 (25 bp)
TTGGTTTGCCTTTAACCTCTCTTCT
LOC_Os02g08190
Os.6022.1.S1_at--244--9611Chr02:4334701..4334725 (25 bp)
TCATCAATTCAGCATCATCGTCTAT
LOC_Os02g08190
Os.6022.1.S1_at--394--3551Chr02:4334686..4334710 (25 bp)
CATCGTCTATGGGTTGTGCTTTTGT
LOC_Os02g08190
Os.6022.1.S1_at--720--7291Chr02:4334671..4334695 (25 bp)
GTGCTTTTGTTTTTCAAGTACGATG
LOC_Os02g08190
Os.6022.1.S1_at--1046--411Chr02:4334640..4334664 (25 bp)
ATCATCGTCATGAGTTGTGCCCAGG
LOC_Os02g08190
Os.6022.1.S1_at--357--9171Chr02:4334623..4334647 (25 bp)
TGCCCAGGTTTCTATGTACTCCATA
LOC_Os02g08190
Target Sequence 
TTCTCATGGGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTT
CCTCCAGGTGAAGAACAGCCACCACGAGTGCTACCAGTGCCANGGAGGGGCTCAAGAGCTGCTACTGCTACAAGGNGATC
CCCAAGGACGAGTCCATNGTNCGCCANCCNGNTTCATGCACGANAANGTACGCCGTCAGCGACACCCCGGAGGCGCCGCT
GGTGGTGGCNACCCCCATGAAGGTCACCTCCTTCAGCATCTNCAGCAAGCACTAGCANCTCGCCTTTCTGCTACGACATT
TGGNCGGNTTNGNNGTCCGTNCNANNTGNTGTCTTGNAACACTCACTACAGATGAACCGNGNGCNCTTTGGTTTGCCTTT
AACCTCTCTTCTTTTCTTTTCTTTTTTACCTTTGTTTTTTTACATTATATAAGTACGATGATGATCATCATCAATTCAGC
ATCATCGTCTATGGGTTGTGCTTTTGTTTTTCAAGTACGATGATAATCATCATCGTCATGAGTTGTGCCCAGGTTTCTAT
GTACTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis