Browse Element(s) Details


OsAffx.11938.1.S1_x_at

Description tigr:9630.m00776
TID=OsAffx.11938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g081701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein
LOC_Os02g08220Os.15780.1.S1_at11/112+4350869..4351990expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11938.1.S1_x_at--737--9331Chr02:4326665..4326689 (25 bp)
TCGCGCTGGCGTGCTCGTACTGGAA
LOC_Os02g08170
OsAffx.11938.1.S1_x_at--612--7491NONE
GTGGTGGTGGTGTTACAGCCCTCCA
NONE
OsAffx.11938.1.S1_x_at--840--7731NONE
GGTGGTGTTACAGCCCTCCAAGTCC
NONE
OsAffx.11938.1.S1_x_at--984--1251NONE
AGCAGCTCATCATCCGAAGGAACTA
NONE
OsAffx.11938.1.S1_x_at--945--5291NONE
GAAGGAACTACTGACACTCCGCACG
NONE
OsAffx.11938.1.S1_x_at--924--5471NONE
GAACTACTGACACTCCGCACGAAGT
NONE
OsAffx.11938.1.S1_x_at--970--5091NONE
GCACGAAGTCCAGTGCATTCCAGGG
NONE
OsAffx.11938.1.S1_x_at--1024--5831NONE
GACCTAGGAGTGACACGAGAGCTGA
NONE
OsAffx.11938.1.S1_x_at--265--5631NONE
GACACGAGAGCTGAGTAATACGGCA
NONE
OsAffx.11938.1.S1_x_at--814--311NONE
ATACGGCAGCAGACAAAGTCGTCAG
NONE
OsAffx.11938.1.S1_x_at--1112--3911NONE
CGGCGGGACCACGTGCTGGTGATCA
NONE
Target Sequence 
TCGCGCTGGCGTGCTCGTACTGGAAGCTCGCCGCCGCCGGCGGCGGCGGCGGCGGCGGGCAAGACGGCGGCGAGGAGAGC
CGGGATGGTGGTGGTGGTGGTGTTACAGCCCTCCAAGTCCTCTCGGACAGCAGCTCATCATCCGAAGGAACTACTGACAC
TCCGCACGAAGTCCAGTGCATTCCAGGGGACCTAGGAGTGACACGAGAGCTGAGTAATACGGCAGCAGACAAAGTCGTCA
GGTCGGCGCGGGACCGGCGGGACCACGTGCTGGTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11938.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis