Browse Element(s) Details


Os.13999.1.S1_at

Description gb:AK109630.1
DB_XREF= gi:32994839
TID=Os.13999.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D02, full insert sequence.
FL= gb:AK109630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0815011/11CONSTANS-like protein CO7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13999.1.S1_at--329--9411Chr02:4316565..4316589 (25 bp)
TCGTGCCTACCTTCTAGTGTTCTAG
LOC_Os02g08150
Os.13999.1.S1_at--456--3711Chr02:4316578..4316602 (25 bp)
CTAGTGTTCTAGCTCATCGATCTGA
LOC_Os02g08150
Os.13999.1.S1_at--836--371Chr02:4316626..4316650 (25 bp)
ATCAAGCTGGCGTTGCATACGTACA
LOC_Os02g08150
Os.13999.1.S1_at--73--6951Chr02:4316653..4316677 (25 bp)
GTAGTACTTCAATTCACCATGCATA
LOC_Os02g08150
Os.13999.1.S1_at--1133--10711Chr02:4316742..4316766 (25 bp)
TTGAGTTTTAGGCTAGTTTCTGCAA
LOC_Os02g08150
Os.13999.1.S1_at--626--9391Chr02:4316767..4316791 (25 bp)
TCGTGTTTGCTAGAACGGCTATAAC
LOC_Os02g08150
Os.13999.1.S1_at--507--7431Chr02:4316826..4316850 (25 bp)
GTGTTTTGTAGTACCGATCTGATGA
LOC_Os02g08150
Os.13999.1.S1_at--83--10211Chr02:4316867..4316891 (25 bp)
TATTTGGGCAAAATCGATCGATCTC
LOC_Os02g08150
Os.13999.1.S1_at--654--132Chr02:4316904..4316928 (25 bp)
ATTAACATGCATGCGATCGATCGAT
LOC_Os02g08150
Os.13999.1.S1_at--433--4631Chr02:4316916..4316940 (25 bp)
GCGATCGATCGATTGCGCGCGAGAT
LOC_Os02g08150
Os.13999.1.S1_at--1045--71Chr02:4316927..4316951 (25 bp)
ATTGCGCGCGAGATCTGGATTGAGA
LOC_Os02g08150
Target Sequence 
TCGTGCCTACCTTCTAGTGTTCTAGCTCATCGATCTGAACGTTTTTTGAGCTGGCAAATTGATCAAGCTGGCGTTGCATA
CGTACAACGTAGTACTTCAATTCACCATGCATAGGATTAGCCANAAGTTCTAGTTGATCACAATTCACAAACTTGAAAGT
TTTTTTTANCTAGCCTGATTGAGTTTTAGGCTAGTTTCTGCAANTCGTGTTTGCTAGAACGGCTATAACTAGTTGTAGTT
AATCTGGATTTTCTGTATGTATGGTGTTTTGTAGTACCGATCTGATGATGATGATGAAGAAAAATATTTGGGCAAAATCG
ATCGATCTCATCCNAGTTTCTAATTAACATGCATGCGATCGATCGATTGCGCGCGAGATCTGGATTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis