Browse Element(s) Details


OsAffx.11937.1.S1_at

Description tigr:9630.m00775
TID=OsAffx.11937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0816011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11937.1.S1_at--271--5891Chr02:4321760..4321784 (25 bp)
GAGCGTCAATATGCTGGCCTTGCAC
LOC_Os02g08160
OsAffx.11937.1.S1_at--700--9031Chr02:4321780..4321804 (25 bp)
TGCACCTGCATTTCGGAGTTCGGAA
LOC_Os02g08160
OsAffx.11937.1.S1_at--1071--9571Chr02:4321905..4321929 (25 bp)
TCTTCCATCATCATTACTGCATTGC
LOC_Os02g08160
OsAffx.11937.1.S1_at--292--71Chr02:4321925..4321949 (25 bp)
ATTGCATCAGATCGTTGCCTCTGTG
LOC_Os02g08160
OsAffx.11937.1.S1_at--68--9191Chr02:4321940..4321964 (25 bp)
TGCCTCTGTGCTTCATAGTGCATTA
LOC_Os02g08160
OsAffx.11937.1.S1_at--441--3911Chr02:4323519..4323543 (25 bp)
CTGGACGCACTAGCAACATTGATGT
LOC_Os02g08160
OsAffx.11937.1.S1_at--876--10771Chr02:4323537..4323561 (25 bp)
TTGATGTCAACTTCTGGCAGGAGGC
LOC_Os02g08160
OsAffx.11937.1.S1_at--1086--5271Chr02:4323572..4323596 (25 bp)
GAATGTGTCCAGTCACACCTTAAGA
LOC_Os02g08160
OsAffx.11937.1.S1_at--1106--6291Chr02:4323595..4323619 (25 bp)
GATGATGATCTTACGGGAGTTCCAA
LOC_Os02g08160
OsAffx.11937.1.S1_at--382--2351Chr02:4323627..4323651 (25 bp)
AAAGCGAGCTTTCCTTCCTCAAGTT
LOC_Os02g08160
OsAffx.11937.1.S1_at--676--2511Chr02:4323699..4323723 (25 bp)
AACTTGGAAGGTACTCTGCACCGGA
LOC_Os02g08160
Target Sequence 
GAGCGTCAATATGCTGGCCTTGCACCTGCATTTCGGAGTTCGGAATGAAGTGAAAATGCTGCCCAGCTTCCTCAGATGCT
TTCCCAACGTTGAGACGCTGTGTATCGAGGTGGAGTCAAATCCTCCTTTCCCTGCACTTGTTGTTTCTTCCATCATCATT
ACTGCATTGCATCAGATCGTTGCCTCTGTGCTTCATAGTGCATTACTATCTGAAGAAGCACCTGGACGCACTAGCAACAT
TGATGTCAACTTCTGGCAGGAGGCCGGCCCCATTGAATGTGTCCAGTCACACCTTAAGATGATGATCTTACGGGAGTTCC
AAGGGGAGGAAAGCGAGCTTTCCTTCCTCAAGTTCGTCGGCGAGAATGCTCGAGTGCTGGAGAAGATGGTGATTGTGATG
AAACTTGGAAGGTACTCTGCACCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis