Browse Element(s) Details


Os.49797.1.A1_at

Description gb:AK111625.1
DB_XREF= gi:37988288
TID=Os.49797.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113N20, full insert sequence.
FL= gb:AK111625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0814011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49797.1.A1_at--339--5491Chr02:4307610..4307727 (25 bp)
GAACAGCTCTCTGGTGGAGATTCAG
LOC_Os02g08140
Os.49797.1.A1_at--1116--1471Chr02:4307564..4307588 (25 bp)
AGCAATCTTGATCTTACTCTGTCGG
LOC_Os02g08140
Os.49797.1.A1_at--157--9151Chr02:4307413..4307437 (25 bp)
TGCGTCGTCGAGGTGTCCAAATCAA
LOC_Os02g08140
Os.49797.1.A1_at--163--5431Chr02:4307247..4307271 (25 bp)
GAAGCCTATCAAGCTTGCTCAATGG
LOC_Os02g08140
Os.49797.1.A1_at--261--9091Chr02:4307232..4307256 (25 bp)
TGCTCAATGGTGGACAGCTGTCTGC
LOC_Os02g08140
Os.49797.1.A1_at--379--4731Chr02:4307216..4307240 (25 bp)
GCTGTCTGCAAGCTCATCTGATATG
LOC_Os02g08140
Os.49797.1.A1_at--817--3191Chr02:4307106..4307130 (25 bp)
CAAGAGTGCCTACCGGGCAACTGGT
LOC_Os02g08140
Os.49797.1.A1_at--230--8131Chr02:4307047..4307071 (25 bp)
GGACTAAAGTCATTCATCGCCCTTC
LOC_Os02g08140
Os.49797.1.A1_at--716--4311Chr02:4307027..4307051 (25 bp)
CCTTCTGCCGTAAATGCTGGTGCTG
LOC_Os02g08140
Os.49797.1.A1_at--264--4731Chr02:4307012..4307036 (25 bp)
GCTGGTGCTGACGTGTTGTAACTTG
LOC_Os02g08140
Os.49797.1.A1_at--767--7051Chr02:4306995..4307019 (25 bp)
GTAACTTGTACCTTCAACTGTATGA
LOC_Os02g08140
Target Sequence 
GAACAGCTCTCTGGTGGAGATTCAGGACAGCAAATTACTACCAAGAAGCAATCTTGATCTTACTCTGTCGGCCGAGGTGA
TCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACTGGGGATCTGAGATCATACAAAGAGTTCTGTAGA
AGCCTATCAAGCTTGCTCAATGGTGGACAGCTGTCTGCAAGCTCATCTGATATGGAGTGTGATTAATCAAGTTATGTTCT
ATGAGTAGATGAATCAATGAATCTTCAATTATCACAAACTCATGGAGTTCAGGAGCAAACAAGAGTGCCTACCGGGCAAC
TGGTGAGTGGTGACCTGAAAAAAAGGTGATGATAAACAGGACTAAAGTCATTCATCGCCCTTCTGCCGTAAATGCTGGTG
CTGACGTGTTGTAACTTGTACCTTCAACTGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49797.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis