Browse Element(s) Details


Os.10669.1.S1_at

Description gb:AK070083.1
DB_XREF= gi:32980107
TID=Os.10669.1
CNT=45
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.10669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045L07, full insert sequence.
FL= gb:AK070083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0810011/114-coumarate-CoA ligase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009698biological_processphenylpropanoid metabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10669.1.S1_at--1049--371Chr02:4285167..4285191 (25 bp)
ATCACTCACCCGGAGATCAAGGACG
LOC_Os02g08100
Os.10669.1.S1_at--209--7211Chr02:4285197..4285315 (25 bp)
GTCGTCTCGATGAAGGATGATCTTG
LOC_Os02g08100
Os.10669.1.S1_at--661--8831Chr02:4285308..4285332 (25 bp)
TGATCTTGCCGGTGAAGTGCCAGTC
LOC_Os02g08100
Os.10669.1.S1_at--330--1151Chr02:4285329..4285353 (25 bp)
AGTCGCCTTCATTGTCCGGACAGAA
LOC_Os02g08100
Os.10669.1.S1_at--916--2931Chr02:4285352..4285376 (25 bp)
AAGGCTCAGAAATCACCGAGGATGA
LOC_Os02g08100
Os.10669.1.S1_at--343--2231Chr02:4285503..4285527 (25 bp)
ACAAGGTGTTCTTCACCGATTCCAT
LOC_Os02g08100
Os.10669.1.S1_at--338--5311Chr02:4285558..4285582 (25 bp)
GAAGGACTTGAGAGCCAGGCTCGCC
LOC_Os02g08100
Os.10669.1.S1_at--636--4491Chr02:4285616..4285640 (25 bp)
GCCGATGCGCCCAAAAGCAGCTAAG
LOC_Os02g08100
Os.10669.1.S1_at--372--1511Chr02:4285631..4285655 (25 bp)
AGCAGCTAAGGCCAACGCCGACGTT
LOC_Os02g08100
Os.10669.1.S1_at--61--5051Chr02:4285694..4285718 (25 bp)
GCAGAGATATGATGTTGCTGTCCAT
LOC_Os02g08100
Os.10669.1.S1_at--702--3831Chr02:4285780..4285804 (25 bp)
CTGCTGCAGCAGCTTGTGCAATGTT
LOC_Os02g08100
Target Sequence 
ATCACTCACCCGGAGATCAAGGACGCCGCCGTCGTCTCGATGAAGGATGATCTTGCCGGTGAAGTGCCAGTCGCCTTCAT
TGTCCGGACAGAAGGCTCAGAAATCACCGAGGATGAGATCAAGAAATTCGTTGCAAAAGAGGTGGTGTTCTACAAGAGGA
TCAACAAGGTGTTCTTCACCGATTCCATCCCCAAGAACCCTTCCGGCAAGATCCTCAGGAAGGACTTGAGAGCCAGGCTC
GCCGCCGGCATCCCCGACGCCGTCGCCGCCGCCGCCGCCGATGCGCCCAAAAGCAGCTAAGGCCAACGCCGACGTTTTCT
CTATTTTCAGTCACACAACCGGTGAANAAAAAAATGCAGAGATATGATGTTGCTGTCCATGAAAATGGAGGCAGAAATGG
AGCAGAGGAAGTTTATAGTTTGGTTTGTTGGTTGGTTGATGCTGCTGCAGCAGCTTGTGCAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis