Browse Element(s) Details


Os.46427.1.A1_s_at

Description gb:CF329902
DB_XREF= gi:33808025
DB_XREF=NACL--05-G11.g1
CLONE=NACL--05-G11
TID=Os.46427.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46427 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0809011/11small nuclear ribonucleoprotein F, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08070OsAffx.11936.1.S1_at11/112+4247469..4251022SBP domain containing protein, expressed
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46427.1.A1_s_at--902--291Chr02:4270782..4270806 (25 bp)
ATAGCCCGGGCCATGTCCAGATTGA
LOC_Os02g08090
Os.46427.1.A1_s_at--195--1671Chr02:4270780..4270804 (25 bp)
AGCCCGGGCCATGTCCAGATTGATT
LOC_Os02g08090
Os.46427.1.A1_s_at--960--4191Chr02:4270778..4270802 (25 bp)
CCCGGGCCATGTCCAGATTGATTAT
LOC_Os02g08090
Os.46427.1.A1_s_at--672--4251Chr02:4270777..4270801 (25 bp)
CCGGGCCATGTCCAGATTGATTATT
LOC_Os02g08090
Os.46427.1.A1_s_at--612--7551Chr02:4270775..4270799 (25 bp)
GGGCCATGTCCAGATTGATTATTGT
LOC_Os02g08090
Os.46427.1.A1_s_at--524--4431Chr02:4270773..4270797 (25 bp)
GCCATGTCCAGATTGATTATTGTAA
LOC_Os02g08090
Os.46427.1.A1_s_at--529--3511Chr02:4270771..4270795 (25 bp)
CATGTCCAGATTGATTATTGTAATA
LOC_Os02g08090
Os.46427.1.A1_s_at--816--10211Chr02:4270756..4270780 (25 bp)
TATTGTAATATGCTGCTGACATGAA
LOC_Os02g08090
Os.46427.1.A1_s_at--382--2231Chr02:4270733..4270757 (25 bp)
AACAATTAAGTGTCATGTACAACTG
LOC_Os02g08090
Os.46427.1.A1_s_at--1028--2851Chr02:4270726..4270750 (25 bp)
AAGTGTCATGTACAACTGATGCAGA
LOC_Os02g08090
Os.46427.1.A1_s_at--93--2211Chr02:4270715..4270739 (25 bp)
ACAACTGATGCAGATTGACCTGGAT
LOC_Os02g08090
Target Sequence 
ATAGCCCGGGCCATGTCCAGATTGATTATTGTAATATGCTGCTGACATGAACAATTAAGTGTCATGTACAACTGATGCAG
ATTGACCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46427.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis