Browse Element(s) Details


OsAffx.2545.1.S1_at

Description tigr:9630.m00764
TID=OsAffx.2545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0809011/11small nuclear ribonucleoprotein F, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08070OsAffx.11936.1.S1_at11/112+4247469..4251022SBP domain containing protein, expressed
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2545.1.S1_at--1009--2071Chr02:4272595..4272619 (25 bp)
ACATCAAGGTTCTCTATGTGGACTA
LOC_Os02g08090
OsAffx.2545.1.S1_at--703--3211Chr02:4272591..4272615 (25 bp)
CAAGGTTCTCTATGTGGACTATGCT
LOC_Os02g08090
OsAffx.2545.1.S1_at--1014--7891Chr02:4272588..4272612 (25 bp)
GGTTCTCTATGTGGACTATGCTTTA
LOC_Os02g08090
OsAffx.2545.1.S1_at--1152--3691Chr02:4272582..4272606 (25 bp)
CTATGTGGACTATGCTTTACTTGAA
LOC_Os02g08090
OsAffx.2545.1.S1_at--510--4891Chr02:4272569..4272593 (25 bp)
GCTTTACTTGAATTGGAGCTTCAGA
LOC_Os02g08090
OsAffx.2545.1.S1_at--922--2771Chr02:4272545..4272569 (25 bp)
AAGAGCATTGAGGAACTATTGTATC
LOC_Os02g08090
OsAffx.2545.1.S1_at--683--8171Chr02:4272534..4272558 (25 bp)
GGAACTATTGTATCCCTCTTTGAGT
LOC_Os02g08090
OsAffx.2545.1.S1_at--25--2051Chr02:4272531..4272555 (25 bp)
ACTATTGTATCCCTCTTTGAGTGGG
LOC_Os02g08090
OsAffx.2545.1.S1_at--107--2471Chr02:4272507..4272527 (21 bp)
AACAAAGACAATGACCCAGTGACTG
LOC_Os02g08090
OsAffx.2545.1.S1_at--359--5611Chr02:4272138..4272521 (25 bp)
GACAATGACCCAGTGACTGTGCCAG
LOC_Os02g08090
OsAffx.2545.1.S1_at--490--691Chr02:4272134..4272517 (25 bp)
ATGACCCAGTGACTGTGCCAGTTAA
LOC_Os02g08090
Target Sequence 
ACATCAAGGTTCTCTATGTGGACTATGCTTTACTTGAATTGGAGCTTCAGAAGAGCATTGAGGAACTATTGTATCCCTCT
TTGAGTGGGGAAAACAAAGACAATGACCCAGTGACTGTGCCAGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis