Browse Element(s) Details


Os.54137.1.S1_at

Description gb:AK102107.1
DB_XREF= gi:32987316
TID=Os.54137.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084D15, full insert sequence.
FL= gb:AK102107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0808011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08050NANA2+4239050..4240507hypothetical protein
LOC_Os02g08060NANA2+4245116..4245478hypothetical protein
LOC_Os02g08070OsAffx.11936.1.S1_at11/112+4247469..4251022SBP domain containing protein, expressed
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54137.1.S1_at--503--7051Chr02:4265419..4265539 (25 bp)
GTAACACAGGCACCATCTGCAATGA
LOC_Os02g08080
Os.54137.1.S1_at--657--5191Chr02:4265401..4265425 (25 bp)
GCAATGACCCTTGTTCTGTTTCAAA
LOC_Os02g08080
Os.54137.1.S1_at--60--3491Chr02:4264970..4264994 (25 bp)
CAGGCGTGCCGCTTGAAAACAGTCC
LOC_Os02g08080
Os.54137.1.S1_at--1018--1751Chr02:4264891..4264915 (25 bp)
ACCTGCTAATGTATATCGTCGCCAA
LOC_Os02g08080
Os.54137.1.S1_at--646--6111Chr02:4264840..4264864 (25 bp)
GAGTGGTCCATCACATCAAGGCGAA
LOC_Os02g08080
Os.54137.1.S1_at--216--1791Chr02:4264816..4264840 (25 bp)
ACCGATAGCGGTTGGCCAGGAGCCA
LOC_Os02g08080
Os.54137.1.S1_at--16--7051Chr02:4264582..4264606 (25 bp)
GTAAAAGGCTCACTCCAGGTTCGAG
LOC_Os02g08080
Os.54137.1.S1_at--398--7651Chr02:4264524..4264548 (25 bp)
GGGAGAAACTGCTTAATGCCTTTGA
LOC_Os02g08080
Os.54137.1.S1_at--676--591Chr02:4264509..4264533 (25 bp)
ATGCCTTTGATCGTTGCTATCTTCA
LOC_Os02g08080
Os.54137.1.S1_at--1047--1731Chr02:4264446..4264470 (25 bp)
ACCTTCAGTTTCTTAGCACTTCGGA
LOC_Os02g08080
Os.54137.1.S1_at--993--10191Chr02:4264388..4264412 (25 bp)
TATATATGGCAAGCCTAGCGCGGCA
LOC_Os02g08080
Target Sequence 
GTAACACAGGCACCATCTGCAATGACCCTTGTTCTGTTTCAAAACTTATGTTTCAAGAGGACAAGGAGGCTGCGCCCAGT
TCATCAACAGGCGTGCCGCTTGAAAACAGTCCTAGGAATTGCACAGGAGCTAGCCTGCAAAGGAGCACTCAAACTAGGAG
AAGTTCACCTGCTAATGTATATCGTCGCCAATACATTGACAGCAGAACCCGATCAAGGAGTGGTCCATCACATCAAGGCG
AACCGATAGCGGTTGGCCAGGAGCCAGACTTGGCTCCAACCCAGGCGAAGAAACCGGTTGGGAGGCCAAGGAAGTCAAGA
AGGTGAGGTACTGGAAGGCCAGCAGAAGATGAAGAATGCGCAAGATCAGAACTGTAAAAGGCTCACTCCAGGTTCGAGCT
AACACCAGTAATTTCTAATTACCAGTATTCAGGGAGAAACTGCTTAATGCCTTTGATCGTTGCTATCTTCAGTAGACTAA
CTAAGCAATGCTACTACTATTCTGAATTTACCTTCAGTTTCTTAGCACTTCGGAATTCTAAAACTTTTGATGAGTTCCTT
TGATGTATATATATGGCAAGCCTAGCGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis