Browse Element(s) Details


Os.50143.1.S1_at

Description gb:AK119941.1
DB_XREF= gi:37989564
TID=Os.50143.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-B07, full insert sequence.
FL= gb:AK119941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0811010/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50143.1.S1_at--162--1591Chr02:4288418..4288442 (25 bp)
AGCTCGTCAGGTGCATGTACTGCTC
LOC_Os02g08110
Os.50143.1.S1_at--310--7531Chr02:4288360..4288384 (25 bp)
GTGGACATCTTTCCTGCTCGACAAG
LOC_Os02g08110
Os.50143.1.S1_at--144--9111NONE
TGCTCGACAAGGGATGCGCGTACGT
NONE
Os.50143.1.S1_at--923--6211Chr02:4287383..4287407 (25 bp)
GAGGCCTTGCAGTGGAGCAAGCTCT
LOC_Os02g08110
Os.50143.1.S1_at--234--8071Chr02:4287370..4287394 (25 bp)
GGAGCAAGCTCTGCAACATCTACAC
LOC_Os02g08110
Os.50143.1.S1_at--124--4571Chr02:4287210..4287234 (25 bp)
GCGCGCGGCAGTACTAGCTACCTCT
LOC_Os02g08110
Os.50143.1.S1_at--403--1751Chr02:4287191..4287215 (25 bp)
ACCTCTCCGCACTAGAAATCTCTAA
LOC_Os02g08110
Os.50143.1.S1_at--322--9991Chr02:4287110..4287134 (25 bp)
TAGCTACTAGCTATAGGAGGCCAGC
LOC_Os02g08110
Os.50143.1.S1_at--276--8011Chr02:4287095..4287119 (25 bp)
GGAGGCCAGCAAGTACATATGTAAT
LOC_Os02g08110
Os.50143.1.S1_at--617--9751Chr02:4287074..4287098 (25 bp)
TAATTTGAAGCTACGTATGGCTGCT
LOC_Os02g08110
Os.50143.1.S1_at--253--8311Chr02:4287056..4287080 (25 bp)
GGCTGCTTTTTAGCAACGTCTGACA
LOC_Os02g08110
Target Sequence 
AGCTCGTCAGGTGCATGTACTGCTCCTCCTCCGGCGACGCCGGCGCCATGGCGGTGGCGTGGACATCTTTCCTGCTCGAC
AAGGGATGCGCGTACGTGGTGTTCGCGAGCACGGCGGCGGCGCTGCAGGCGTGTATGGTGGGGCTGATCGGCGTGGAGGC
CTTGCAGTGGAGCAAGCTCTGCAACATCTACACCCGCTTCTGCGAGCAGGCCGCCGCCGGCATGCTCTGCAGCTTCCTCG
CCGCCGCCGGCATGGCCGTCCTCTCCGCCTTCTCCGCCCGCCGCCTCTTCCGCCTCTACTCGCCGGCCGGCCACCGCCGC
AGCTGCCCGCGCGCGGCAGTACTAGCTACCTCTCCGCACTAGAAATCTCTAATTCTAGAGATAGAGATGAATCTGAATAT
AAGTATGTTCAGATACATCTCAGAATTATAGCTACTAGCTATAGGAGGCCAGCAAGTACATATGTAATTTGAAGCTACGT
ATGGCTGCTTTTTAGCAACGTCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis