Browse Element(s) Details


Os.15780.1.S1_at

Description gb:AK110943.1
DB_XREF= gi:32996152
TID=Os.15780.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-H03, full insert sequence.
FL= gb:AK110943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein
LOC_Os02g08220Os.15780.1.S1_at11/112+4350869..4351990expressed protein
LOC_Os02g08230Os.4769.1.S1_at11/112+4355059..4362385Gl1 protein, putative, expressed
LOC_Os02g08240OsAffx.11939.1.S1_at5/112+4376785..4380320Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15780.1.S1_at--114--991Chr02:4351283..4351307 (25 bp)
AGGAGGACGCCATTGATGAGTAGTA
LOC_Os02g08220
Os.15780.1.S1_at--8--6051Chr02:4351391..4351415 (25 bp)
GAGATCTCGCTGCTGCACGAGGCCA
LOC_Os02g08220
Os.15780.1.S1_at--337--831Chr02:4351415..4351439 (25 bp)
ATGGATTACGTCGTTCATCTGCACG
LOC_Os02g08220
Os.15780.1.S1_at--704--471Chr02:4351431..4351455 (25 bp)
ATCTGCACGCCCAGGTCGACGTGCT
LOC_Os02g08220
Os.15780.1.S1_at--893--4171Chr02:4351694..4351718 (25 bp)
CCCATGCTAGATAGTAGGATGTGAT
LOC_Os02g08220
Os.15780.1.S1_at--819--7711Chr02:4351769..4351793 (25 bp)
GGGTGATCAGATTTATGTCCCTGAT
LOC_Os02g08220
Os.15780.1.S1_at--946--10111Chr02:4351782..4351806 (25 bp)
TATGTCCCTGATCACACTTGATAAG
LOC_Os02g08220
Os.15780.1.S1_at--554--5171Chr02:4351806..4351830 (25 bp)
GCAAGTGCAGAAGTGCCCGGAGAAA
LOC_Os02g08220
Os.15780.1.S1_at--223--3091Chr02:4351856..4351880 (25 bp)
AATCAAGATTCGTACTGTTCAAAGA
LOC_Os02g08220
Os.15780.1.S1_at--1083--7711Chr02:4351905..4351929 (25 bp)
GGTGGTACTAATTGTAGTAGCCACT
LOC_Os02g08220
Os.15780.1.S1_at--253--6931Chr02:4351918..4351942 (25 bp)
GTAGTAGCCACTTTTGTACCAGAAG
LOC_Os02g08220
Target Sequence 
AGGAGGACGCCATTGATGAGTAGTAGTAGTGAGGTTGCGAGGAGACTGGTGAAGAAGAGGGACAAGGTGCTGAGGAGGAT
GATACCCGGAGGCNAGCTCNTCGCCGNACGAGATCTCGCTGCTGCACGAGGCCATGGATTACGTCGTTCATCTGCACGCC
CAGGTCGACGTGCTCCGCCGCGTCTCGAGAGCCGCCGTGGCGCGGAGATCNCAGTGCGTCTTCTTCTTCTTCAGGTGGGC
TTGCACAATTGNAAGGNANCGGNCGGTTCAGATCNCTGGTGAAACGGAGANCCCATGCTAGATAGTAGGATGTGATTCTG
NAAAGAGGNAGNCAAGNATGTNGTTGCAGNATATTGGAGAAANTATCCAAGAGGGTGATCAGATTTATGTCCCTGATCAC
ACTTGATAAGCAAGTGCAGAAGTGCCCGGAGAAATAGAAGTGGAAGAGTGGTGGAGAGTAATCAAGATTCGTACTGTTCA
AAGATGAATGAGAGGAAATTTGTAAGTTGGTGGTACTAATTGTAGTAGCCACTTTTGTACCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis