Browse Element(s) Details


Os.14778.1.S1_at

Description gb:AK069065.1
DB_XREF= gi:32979089
TID=Os.14778.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007H17, full insert sequence.
FL= gb:AK104908.1 gb:AK069065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0830011/11DNA repair protein RAD23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08260Os.47991.1.S1_at10/112+4384185..4388025metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os02g08270Os.49453.1.S1_at10/112+4390147..4393561glutamine amidotransferase class-I family protein, expressed
LOC_Os02g08280Os.47463.1.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08280Os.14491.2.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
GO:0006289biological_processnucleotide-excision repair
GO:0006512biological_processubiquitin cycle
GO:0003684molecular_functiondamaged DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14778.1.S1_at--166--8131Chr02:4412044..4412068 (25 bp)
GGACTTCTTAGACCAACCTGACCAG
LOC_Os02g08300
Os.14778.1.S1_at--238--6311Chr02:4412069..4412093 (25 bp)
GATGAGATGCCCCATTCTATCAATG
LOC_Os02g08300
Os.14778.1.S1_at--1069--5931Chr02:4412254..4412278 (25 bp)
GAGCACGTGTCATCGAAGCATTCTT
LOC_Os02g08300
Os.14778.1.S1_at--1037--10471Chr02:4412356..4412481 (25 bp)
TTAAACCCGCTTATTCTGTACACCT
LOC_Os02g08300
Os.14778.1.S1_at--844--1751Chr02:4412478..4412502 (25 bp)
ACCTGCCCTGCAATTTATCAGACTT
LOC_Os02g08300
Os.14778.1.S1_at--633--2791Chr02:4412506..4412530 (25 bp)
AAGTTTGCGGGTGCTTTGGATCCAA
LOC_Os02g08300
Os.14778.1.S1_at--437--6031Chr02:4412543..4412567 (25 bp)
GAGATGGAGCTAACACCGCGTTGCA
LOC_Os02g08300
Os.14778.1.S1_at--989--4631Chr02:4412560..4412584 (25 bp)
GCGTTGCATCGATTTATCTCTTGTA
LOC_Os02g08300
Os.14778.1.S1_at--356--3591Chr02:4412636..4412660 (25 bp)
CATTTATTCGAGCTGTCTGAGGGAC
LOC_Os02g08300
Os.14778.1.S1_at--391--10231Chr02:4412668..4412692 (25 bp)
TTTGTCCATCCGTTTTTAGCCAGAA
LOC_Os02g08300
Os.14778.1.S1_at--107--10771Chr02:4412715..4412739 (25 bp)
TTGACCACATTTTCTGTCCTGTTTG
LOC_Os02g08300
Target Sequence 
GGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGAC
GGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAANGAGCAACTCGCAGCA
AATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCAA
TTTATCAGACTTTNGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCG
ATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTG
TCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAGCCAGAAATTTCAATGGATGTGAATTGTGTTGACCACATTTTCTG
TCCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis