Browse Element(s) Details


Os.8495.1.S1_at

Description gb:AU096463
DB_XREF= gi:8859145
DB_XREF=AU096463
CLONE=S13758
TID=Os.8495.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8495 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194808.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0835011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g08380Os.16502.1.S1_at11/112+4460297..4463658expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8495.1.S1_at--348--411Chr02:4433426..4433450 (25 bp)
ATCATTCGGCCGTTTCGAAGTTCAT
LOC_Os02g08350
Os.8495.1.S1_at--905--691Chr02:4433403..4433427 (25 bp)
ATGAGCTCGCGGTCTTTGTTCGGAA
LOC_Os02g08350
Os.8495.1.S1_at--1068--10651Chr02:4433165..4433189 (25 bp)
TTCCATGCTGAACCCGTACAATCTG
LOC_Os02g08350
Os.8495.1.S1_at--778--9491Chr02:4433144..4433168 (25 bp)
TCTGCCTGTGGGATGTGAGTACTTC
LOC_Os02g08350
Os.8495.1.S1_at--1105--6031Chr02:4433128..4433152 (25 bp)
GAGTACTTCCTGGTGACGGTCGCGA
LOC_Os02g08350
Os.8495.1.S1_at--632--5751Chr02:4433114..4433138 (25 bp)
GACGGTCGCGATGATACCTGACAAT
LOC_Os02g08350
Os.8495.1.S1_at--880--6651Chr02:4433085..4433109 (25 bp)
GTTGAAAACGCCTTCCTGATCATGC
LOC_Os02g08350
Os.8495.1.S1_at--493--3871Chr02:4433070..4433094 (25 bp)
CTGATCATGCCTATGGCTGCTGAAA
LOC_Os02g08350
Os.8495.1.S1_at--32--8671Chr02:4432981..4433005 (25 bp)
TGTGGCTTCTTCATCCTTTGTACAT
LOC_Os02g08350
Os.8495.1.S1_at--316--7911Chr02:4432942..4432966 (25 bp)
GGTTCCTTTGTAAATAGACTCTCAG
LOC_Os02g08350
Os.8495.1.S1_at--258--1411Chr02:4432927..4432951 (25 bp)
AGACTCTCAGCTACCACTGATGTTA
LOC_Os02g08350
Target Sequence 
ATCATTCGGCCGTTTCGAAGTTCATGAGCTCGCGGTCTTTGTTCGGAACCCNNTNCTGGNCATTNACGAANCAANTCNAA
CCGGAACTGCTCAAACTACTACCTATCNANGAGGAATCANTGNCCCTATTCACGGANCAGCATCCACGGCACCCAGCTTA
CATAATCGGNCAGATTGTGCACATCGAACGGCGCATANCAAAGCTGCCCTCGCACGGTGACCAGATGGAAGCTTCACGCC
TTGATANCGGTGNCCNCCGGTCGCCCGCTTCCATGCTGAACCCGTACAATCTGCCTGTGGGATGTGAGTACTTCCTGGTG
ACGGTCGCGATGATACCTGACAATATTCGTTGAAAACGCCTTCCTGATCATGCCTATGGCTGCTGAAATGAAGGGAGAAA
CTCTCAACTGTAAATATACTGAAACTGAAATTTATAGACTTCCTTGNTTGCTTGTGGCTTCTTCATCCTTTGTACATAAT
GATGATGATCAGGTTCCTTTGTAAATAGACTCTCAGCTACCACTGATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis