Browse Element(s) Details


Os.18975.1.S1_at

Description gb:AK067359.1
DB_XREF= gi:32977377
TID=Os.18975.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099P19, full insert sequence.
FL= gb:AK104700.1 gb:AK067359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0837011/11Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g08380Os.16502.1.S1_at11/112+4460297..4463658expressed protein
LOC_Os02g08390OsAffx.25936.1.S1_s_at8/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.7.S1_s_at7/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.2.S1_x_at4/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.1.S1_at2/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.5.S1_x_at1/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08400OsAffx.11941.1.S1_x_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.11941.1.S1_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.15919.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18975.1.S1_at--86--1451Chr02:4455407..4455431 (25 bp)
AGAACCTCCTGGCACAGATGGGTGA
LOC_Os02g08370
Os.18975.1.S1_at--609--1311Chr02:4455392..4455416 (25 bp)
AGATGGGTGATCCTTCCGCCAATAG
LOC_Os02g08370
Os.18975.1.S1_at--1035--471Chr02:4455358..4455382 (25 bp)
ATCTGTTGAGCACTCTCTTGCGGAG
LOC_Os02g08370
Os.18975.1.S1_at--280--3631Chr02:4455342..4455366 (25 bp)
CTTGCGGAGGTTGCTGCTCATATTG
LOC_Os02g08370
Os.18975.1.S1_at--446--3691Chr02:4455238..4455262 (25 bp)
CTATGTGCCATTCTTGTTCAATTTC
LOC_Os02g08370
Os.18975.1.S1_at--718--2151Chr02:4455149..4455173 (25 bp)
ACAGCTCTGCTAATCCTAGGTGAAA
LOC_Os02g08370
Os.18975.1.S1_at--60--2571Chr02:4455122..4455146 (25 bp)
AACTGTTATTTGTCTCGATTGCCGT
LOC_Os02g08370
Os.18975.1.S1_at--28--9511Chr02:4455110..4455134 (25 bp)
TCTCGATTGCCGTGGTTTTTGTCAA
LOC_Os02g08370
Os.18975.1.S1_at--449--8951Chr02:4455073..4455097 (25 bp)
TGACTAGCCTTTTGTTTTCGCGGTA
LOC_Os02g08370
Os.18975.1.S1_at--397--6811Chr02:4455060..4455084 (25 bp)
GTTTTCGCGGTAGTGTTTGAACCAT
LOC_Os02g08370
Os.18975.1.S1_at--722--5591Chr02:4454989..4455013 (25 bp)
GAAATTCAGGCGAATGTCCCTTGAA
LOC_Os02g08370
Target Sequence 
AGAACCTCCTGGCACAGATGGGTGATCCTTCCGCCAATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCT
GCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGAGAAGTGGAAGAAGTGGAAGACAGAGAACATCAGGAG
GAAGCACAACTATGTGCCATTCTTGTTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAGCCCCTGATAGAGA
AGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTTTTTGTC
AATGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAGTGTTTGAACCATGTGATGATTATTATCTTTAGTTATAGAT
ATTCGGTCGAATTTAGATGAAATTCAGGCGAATGTCCCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis