Browse Element(s) Details


OsAffx.24164.1.S1_x_at

Description tigr:9630.m00794
TID=OsAffx.24164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Surp module, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0836011/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g08380Os.16502.1.S1_at11/112+4460297..4463658expressed protein
LOC_Os02g08390OsAffx.25936.1.S1_s_at8/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.7.S1_s_at7/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.2.S1_x_at4/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.1.S1_at2/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.5.S1_x_at1/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24164.1.S1_x_at--385--111Chr02:4448197..4448221 (25 bp)
ATTCATCCCCTTGCCTGAATAAGGT
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--40--1051Chr02:4448218..4448242 (25 bp)
AGGTGCAGTGTGATATCCTGTGCCA
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--918--551Chr02:4448232..4448256 (25 bp)
ATCCTGTGCCAGGTTGCATCAGTTA
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--268--10131Chr02:4448271..4448295 (25 bp)
TATGAAGAGTATCTGGCCTGCCACC
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--428--3831Chr02:4448295..4448319 (25 bp)
CTGCCGCATGGCTTGAAGAACCTGT
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--189--2751Chr02:4448310..4448334 (25 bp)
AAGAACCTGTGTATTGAGTGCCCTA
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--647--6111Chr02:4448325..4448349 (25 bp)
GAGTGCCCTACTCATGTAGCTTGAA
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--391--1191Chr02:4448400..4448424 (25 bp)
AGTAGTGCATTGAAACTCTCCGCCT
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--177--7511Chr02:4448429..4448453 (25 bp)
GTGGACGACCGCAGCTAGGAACTTT
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--762--1231Chr02:4448480..4448504 (25 bp)
AGTTGCTTTGGCGACATTGTCCATT
LOC_Os02g08360
OsAffx.24164.1.S1_x_at--1005--91Chr02:4448660..4448684 (25 bp)
ATTCTCATCCTTTGCGTTTGTATAA
LOC_Os02g08360
Target Sequence 
ATTCATCCCCTTGCCTGAATAAGGTGCAGTGTGATATCCTGTGCCAGGTTGCATCAGTTAAAATCTGTTGCATATATGAA
GAGTATCTGGCCTGCCACCTGCCGCATGGCTTGAAGAACCTGTGTATTGAGTGCCCTACTCATGTAGCTTGAAAAACAGG
GACAGCGTGTGAAAAATAGAATATTATCAAGTGGAACTGCGGAAGTAGTGCATTGAAACTCTCCGCCTTGTGGTGGACGA
CCGCAGCTAGGAACTTTGCTTTGGTGACAAATGAAGTCAAGAGAGTTGCTTTGGCGACATTGTCCATTTTTATTCATTGA
TGAAATCAACGAGTGTAGTTGACTAAGTAATCCTTTTTTTTTTTTACAATTTCTGCTATGCTCTAGTTTAGTTGCTATGG
TAGAGGTAGTATAGTGATAGTAGGGGTCAAACTGGGTATGTTTTGTCAGATTGAAGGTGCATTATTCTCATCCTTTGCGT
TTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24164.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis