Browse Element(s) Details


Os.16797.1.S1_at

Description gb:AK110722.1
DB_XREF= gi:32995931
TID=Os.16797.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E01, full insert sequence.
FL= gb:AK110722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0832011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08280Os.47463.1.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08280Os.14491.2.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16797.1.S1_at--766--9951Chr02:4423787..4423811 (25 bp)
TACCTGGCGCTCTCGCTCGAGGTCG
LOC_Os02g08320
Os.16797.1.S1_at--694--8391Chr02:4423835..4423859 (25 bp)
GGCGCCTGGTTCTACGTCAGCCGCG
LOC_Os02g08320
Os.16797.1.S1_at--792--9931Chr02:4423847..4423871 (25 bp)
TACGTCAGCCGCGTGCCGGAGAAGT
LOC_Os02g08320
Os.16797.1.S1_at--124--5771Chr02:4423964..4423988 (25 bp)
GACGTGCTGCTCAACTGGCGGGAGA
LOC_Os02g08320
Os.16797.1.S1_at--1082--9031Chr02:4424003..4424027 (25 bp)
TGCAGCGCGACGTCGTAGGCGACTC
LOC_Os02g08320
Os.16797.1.S1_at--24--10091Chr02:4424018..4424042 (25 bp)
TAGGCGACTCTCCTCTCCTAGGCAT
LOC_Os02g08320
Os.16797.1.S1_at--643--9251Chr02:4424033..4424057 (25 bp)
TCCTAGGCATTTTGCTCATTGCGTT
LOC_Os02g08320
Os.16797.1.S1_at--185--8291Chr02:4424038..4424062 (25 bp)
GGCATTTTGCTCATTGCGTTTTGAT
LOC_Os02g08320
Os.16797.1.S1_at--225--4831Chr02:4424046..4424070 (25 bp)
GCTCATTGCGTTTTGATGATTCAAA
LOC_Os02g08320
Os.16797.1.S1_at--1106--6431Chr02:4424117..4424141 (25 bp)
GATCAGGGTGTGTGACCTTGTGTCA
LOC_Os02g08320
Os.16797.1.S1_at--1013--7371Chr02:4424128..4424152 (25 bp)
GTGACCTTGTGTCATTCGATCGATC
LOC_Os02g08320
Target Sequence 
TACCTGGCGCTCTCGCTCGAGGTCGCCATGGGGCTCGCCTACGCCGCCGGCGCCTGGTTCTACGTCAGCCGCGTGCCGGA
GAAGTGGCGCCCGGGCGTCTTCGACGTCGTCGGCCACAGCCACCAGATCTTCCACGTGCTCGTGCTCGTCGGGGCCGTCA
CGCACTACGTCGCCGTCGACGTGCTGCTCAACTGGCGGGAGACGGTGGCCGCCGCGTGCAGCGCGACGTCGTAGGCGACT
CTCCTCTCCTAGGCATTTTGCTCATTGCGTTTTGATGATTCAAACAATATTCAAATTTANANGNNNGNNNNAGNNNNAGA
NNAGNNNCAGGATCAGGGTGTGTGACCTTGTGTCATTCGATCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis