Browse Element(s) Details


Os.56789.1.S1_at

Description gb:AK110418.1
DB_XREF= gi:32995627
TID=Os.56789.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-H08, full insert sequence.
FL= gb:AK110418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0833011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08280Os.47463.1.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08280Os.14491.2.S1_x_at5/112+4396929..4400652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08290NANA2+4403220..4406550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08300Os.14778.1.S1_at11/112+4407955..4412769DNA repair protein RAD23, putative, expressed
LOC_Os02g08310OsAffx.11940.1.S1_at11/112+4412799..4415057tubby family protein, putative, expressed
LOC_Os02g08320Os.16797.1.S1_at11/112+4423143..4424222Haemolysin-III related family protein, expressed
LOC_Os02g08330Os.56789.1.S1_at11/112+4424446..4426617expressed protein
LOC_Os02g08340OsAffx.12656.2.S1_at10/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340Os.14617.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08340OsAffx.12656.1.S1_at5/112+4427704..4431194hAT family dimerisation domain containing protein
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56789.1.S1_at--858--931Chr02:4424986..4425010 (25 bp)
AGGCACTCTCCGACAAGGCGCGGTT
LOC_Os02g08330
Os.56789.1.S1_at--895--8391Chr02:4424970..4424994 (25 bp)
GGCGCGGTTCATCCGCGAAATGAAC
LOC_Os02g08330
Os.56789.1.S1_at--37--5711Chr02:4424795..4424819 (25 bp)
GACTACGAGGCGATCGTGCGCAAGT
LOC_Os02g08330
Os.56789.1.S1_at--480--4051Chr02:4424785..4424809 (25 bp)
CGATCGTGCGCAAGTACACGGCGGC
LOC_Os02g08330
Os.56789.1.S1_at--591--8791Chr02:4424731..4424755 (25 bp)
TGTTCTGGAACCTGCGGGACTCCAA
LOC_Os02g08330
Os.56789.1.S1_at--443--8171Chr02:4424725..4424749 (25 bp)
GGAACCTGCGGGACTCCAAGGCCGT
LOC_Os02g08330
Os.56789.1.S1_at--508--7271Chr02:4424702..4424726 (25 bp)
GTGCCGGTCACCTCCGGCCAGAAGG
LOC_Os02g08330
Os.56789.1.S1_at--313--4151Chr02:4424605..4424629 (25 bp)
CGCGCGCCGTCATGGAAAAGGCCAT
LOC_Os02g08330
Os.56789.1.S1_at--42--10631Chr02:4424549..4424573 (25 bp)
TTCGATTGAGAAGATGGCAGCCCCT
LOC_Os02g08330
Os.56789.1.S1_at--259--7171Chr02:4424512..4424536 (25 bp)
GTCTCGTGTTCTTCATCTTTTTGTA
LOC_Os02g08330
Os.56789.1.S1_at--1089--7031Chr02:4424470..4424494 (25 bp)
GTAAAAACTAGCAAATCTTCTCTAA
LOC_Os02g08330
Target Sequence 
AGGCACTCTCCGACAAGGCGCGGTTCATCCGCGAAATGAACTGGGGCATGAACACCAACTTCCAGGCGGTGTTCGACAAG
ATCCTCGAGGTGGCCGCGGGCGCCGCCCTCTCGCCGGACAAGATGGTGCGCCGCGTGGTGGTGTTCAGCGACATGGAGTT
CGACCAGGCGTCGGCGCAGCCGTGGGAGACGGACTACGAGGCGATCGTGCGCAAGTACACGGCGGCGGGGTACGGCGCCG
CCGTGCCGGAGGTGGTGTTCTGGAACCTGCGGGACTCCAAGGCCGTGCCGGTCACCTCCGGCCAGAAGGGGGTGGCGCTG
GTCAGCGGCTTCTCCAAGAACCTCCTCAAGCTGTTCCTCGACGGCGACGGCGTCGTCTCCCCGCGCGCCGTCATGGAAAA
GGCCATCTCCGGCCCGGAGTACGACAAGCTCGTCGTCTTCGATTGAGAAGATGGCAGCCCCTGCAGCCCTTTCCGTCTCG
TGTTCTTCATCTTTTTGTAAAGTTTGGGGAAGTTTTGTAAAAACTAGCAAATCTTCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis