Browse Element(s) Details


Os.50935.1.S1_at

Description gb:AK059572.1
DB_XREF= gi:32969590
TID=Os.50935.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A03, full insert sequence.
FL= gb:AK059572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5717011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50935.1.S1_at--804--9331Chr02:35007345..35007369 (25 bp)
TCGCGGTGTGCGCAATCAACCTCCT
LOC_Os02g57170
Os.50935.1.S1_at--130--8391Chr02:35007271..35007292 (22 bp)
GGCGACCACCAGTTCGATTCTGCTC
LOC_Os02g57170
Os.50935.1.S1_at--158--4051Chr02:35006783..35007278 (25 bp)
CGATTCTGCTCAGCTACGGTTTATA
LOC_Os02g57170
Os.50935.1.S1_at--182--4311Chr02:35006771..35006795 (25 bp)
GCTACGGTTTATATGGGAGTCGGAA
LOC_Os02g57170
Os.50935.1.S1_at--945--6031Chr02:35006755..35006779 (25 bp)
GAGTCGGAAGAGTTACGTCGTGCTA
LOC_Os02g57170
Os.50935.1.S1_at--483--6071Chr02:35006746..35006770 (25 bp)
GAGTTACGTCGTGCTATGGAGCCTG
LOC_Os02g57170
Os.50935.1.S1_at--73--4871Chr02:35006734..35006758 (25 bp)
GCTATGGAGCCTGTGGATTTGATCA
LOC_Os02g57170
Os.50935.1.S1_at--784--8911Chr02:35006572..35006596 (25 bp)
TGAGCATGGCATGATGACACAAGAA
LOC_Os02g57170
Os.50935.1.S1_at--903--8811Chr02:35005588..35005612 (25 bp)
TGTTGTCTAGATCCATTTTTTATTC
LOC_Os02g57170
Os.50935.1.S1_at--346--10371Chr02:35005572..35005596 (25 bp)
TTTTTATTCTTCTGTTTCTCTAGTA
LOC_Os02g57170
Os.50935.1.S1_at--834--10571Chr02:35005557..35005581 (25 bp)
TTCTCTAGTAAAAGACCAACTGGGT
LOC_Os02g57170
Target Sequence 
TCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCTTCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGC
GACCACCAGTTCGATTCTGCTCAGCTACGGTTTATATGGGAGTCGGAAGAGTTACGTCGTGCTATGGAGCCTGTGGATTT
GATCAGGAGAGTGAAGGAAATCGAACAAGAAGCTTATGGTGAGCATGGCATGATGACACAAGAAGATGCCAAGCAGGCAG
CTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAAGGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGG
CGCAAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAAT
TGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTGGGGTGGTCTCCTGGTGTCT
GTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTCTAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGACCAAC
TGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis