Browse Element(s) Details


Os.11619.1.A1_at

Description gb:AK071389.1
DB_XREF= gi:32981412
TID=Os.11619.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.11619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091P22, full insert sequence.
FL= gb:AK071389.1 gb:AK058624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5716011/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11619.1.A1_at--747--9111Chr02:34999784..34999808 (25 bp)
TGCTGCATCTTTTGGGCTAGGAAAT
LOC_Os02g57160
Os.11619.1.A1_at--222--8231Chr02:34999770..34999794 (25 bp)
GGCTAGGAAATGCTACCCCAGTTTT
LOC_Os02g57160
Os.11619.1.A1_at--989--10511Chr02:34999747..34999771 (25 bp)
TTCAGCATGGTTCCTGTCAGAGCTA
LOC_Os02g57160
Os.11619.1.A1_at--299--1371Chr02:34999729..34999753 (25 bp)
AGAGCTAGAGCACTGCTTCCTACAA
LOC_Os02g57160
Os.11619.1.A1_at--717--2771Chr02:34999457..34999481 (25 bp)
AAGAGCTTCTACCTGTGTTGCCGAG
LOC_Os02g57160
Os.11619.1.A1_at--264--4951Chr02:34999433..34999457 (25 bp)
GCATTTCGTCGAAGATCCTACCAGA
LOC_Os02g57160
Os.11619.1.A1_at--390--9251Chr02:34999418..34999442 (25 bp)
TCCTACCAGAGGTCATGAGCCGGTT
LOC_Os02g57160
Os.11619.1.A1_at--670--5871Chr02:34999402..34999426 (25 bp)
GAGCCGGTTGTCATCGCGAGTATTT
LOC_Os02g57160
Os.11619.1.A1_at--776--9331Chr02:34999389..34999413 (25 bp)
TCGCGAGTATTTGCACGGTTGATCC
LOC_Os02g57160
Os.11619.1.A1_at--1126--8811Chr02:34999345..34999369 (25 bp)
TGATTTTTCTTACTTCCGACGGGAG
LOC_Os02g57160
Os.11619.1.A1_at--188--9011Chr02:34999318..34999342 (25 bp)
TGCAAACAGTTATTTCTCCCTTTTT
LOC_Os02g57160
Target Sequence 
TGCTGCATCTTTTGGGCTAGGAAATGCTACCCCAGTTTTCAGCATGGTTCCTGTCAGAGCTAGAGCACTGCTTCCTACAA
TCACAGAGGAAGACAGGGTCATCTTGAACAATGTTGAGAAGGTTGTGAAGTTTTTGACAGCTGGGAACAATCCAACNACA
ATTGATGGGGATGTAAATGTTGTGTATCTTGTACAAGAGCTTCTACCTGTGTTGCCGAGCATTTCGTCGAAGATCCTACC
AGAGGTCATGAGCCGGTTGTCATCGCGAGTATTTGCACGGTTGATCCGGGAGGCATTTTTGTGAAGTGATTTTTCTTACT
TCCGACGGGAGATTGCAAACAGTTATTTCTCCCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11619.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis