Browse Element(s) Details


Os.53873.1.S1_x_at

Description gb:AK100544.1
DB_XREF= gi:32985753
TID=Os.53873.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102M09, full insert sequence.
FL= gb:AK100544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5714011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53873.1.S1_x_at--253--5311Chr02:34989978..34990002 (25 bp)
GAAGGTTGCATGTTATCCGGTCCTT
LOC_Os02g57140
Os.53873.1.S1_x_at--563--3971Chr02:34989995..34990019 (25 bp)
CGGTCCTTTGGAACTGTATTTGCTT
LOC_Os02g57140
Os.53873.1.S1_x_at--755--2831Chr02:34990080..34990104 (25 bp)
AAGTTTCTATTCGATGCTGTCAATG
LOC_Os02g57140
Os.53873.1.S1_x_at--32--1371Chr02:34990115..34990139 (25 bp)
AGAGCTCACTTGGACTGCAGAACTG
LOC_Os02g57140
Os.53873.1.S1_x_at--938--5311Chr02:34990156..34990180 (25 bp)
GAAGGTCATCTTCTTTGGAACGCAA
LOC_Os02g57140
Os.53873.1.S1_x_at--499--5271Chr02:34990190..34990214 (25 bp)
GAATGCTTTCAGTAACTCGGCAGCT
LOC_Os02g57140
Os.53873.1.S1_x_at--372--111Chr02:34990248..34990272 (25 bp)
ATTCTTGACAAGTATCCACCCGGAG
LOC_Os02g57140
Os.53873.1.S1_x_at--958--8051Chr02:34990355..34990379 (25 bp)
GGAGACATTCGAGCTCACCAGTATG
LOC_Os02g57140
Os.53873.1.S1_x_at--390--10711Chr02:34990482..34990506 (25 bp)
TTGCTTATGCCTCCTAACATTGCTG
LOC_Os02g57140
Os.53873.1.S1_x_at--835--2071Chr02:34990498..34990522 (25 bp)
ACATTGCTGTTTCACGCGATACTTG
LOC_Os02g57140
Os.53873.1.S1_x_at--929--6471Chr02:34990515..34990539 (25 bp)
GATACTTGCTGCTGTAACACTGCTT
LOC_Os02g57140
Target Sequence 
GAAGGTTGCATGTTATCCGGTCCTTTGGAACTGTATTTGCTTGAGAAGTTCTCAGATTACCAAGAAGAGGGAACCAAATT
ACGGGAAAGGCGGTCGAAAGAGAAGTTTCTATTCGATGCTGTCAATGAGGCACTCACAGAGCTCACTTGGACTGCAGAAC
TGATGGCGTATCCATTGGGAAGGTCATCTTCTTTGGAACGCAAAGATTGTGAGAATGCTTTCAGTAACTCGGCAGCTGAT
GAAATTTGGCGAGTCATAAGGAACTGGTCGATTCTTGACAAGTATCCACCCGGAGAAACTATTGAAAGAAACCTCCTGGT
GGAAATGATACTGAAGAGAGAGGTGTTGGAGGCGGCCAGCAGCGACACGACACGATTGGAGACATTCGAGCTCACCAGTA
TGGTCTGTACAATGGTCTTGGAGGACCTGATTGCAGATGCAGTTGTAGATCTGAGTGCCTGACTAACAACTAGCGAGGTA
CCTCCACTTTTCTAACCACTAATTTTGCTTATGCCTCCTAACATTGCTGTTTCACGCGATACTTGCTGCTGTAACACTGC
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53873.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis