Browse Element(s) Details


Os.49415.1.S1_at

Description gb:AK060021.1
DB_XREF= gi:32970039
TID=Os.49415.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H01, full insert sequence.
FL= gb:AK058331.1 gb:AK060021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5710011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed
LOC_Os02g57090OsAffx.24903.1.S1_at11/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57090Os.47315.1.S1_x_at1/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49415.1.S1_at--1053--7231Chr02:34958244..34958268 (25 bp)
GTCCCCATGATTCTTTGCCTGAAGG
LOC_Os02g57100
Os.49415.1.S1_at--759--10631Chr02:34958195..34958219 (25 bp)
TTCGCTTTCCGAAGTATTCTCTGTG
LOC_Os02g57100
Os.49415.1.S1_at--410--5931Chr02:34958164..34958188 (25 bp)
GAGCATTTTGATTTGGCACCGGTGG
LOC_Os02g57100
Os.49415.1.S1_at--1154--4331Chr02:34958082..34958106 (25 bp)
CCAGCTCCTGTGTCTTAATACTATG
LOC_Os02g57100
Os.49415.1.S1_at--927--5431Chr02:34958058..34958082 (25 bp)
GAACCTCCATCAGTGGTGTTTCAAG
LOC_Os02g57100
Os.49415.1.S1_at--757--5331Chr02:34958010..34958034 (25 bp)
GAAGATTATGCTCTCCACCAAAGTG
LOC_Os02g57100
Os.49415.1.S1_at--262--9051Chr02:34957982..34958006 (25 bp)
TGCAGTTTGATTTTGCCACTTGCCC
LOC_Os02g57100
Os.49415.1.S1_at--532--8831Chr02:34957951..34957975 (25 bp)
TGATTCATCGTTCATTGTCAGCCGG
LOC_Os02g57100
Os.49415.1.S1_at--151--751Chr02:34957922..34957946 (25 bp)
ATGTATATCACTATGTCCTGTCCAC
LOC_Os02g57100
Os.49415.1.S1_at--468--2611Chr02:34957842..34957866 (25 bp)
AACCCTCGCGATGACTGGCAGAATT
LOC_Os02g57100
Os.49415.1.S1_at--630--5251Chr02:34957794..34957818 (25 bp)
GAATCTTTTATCTGTGGCCATCTTT
LOC_Os02g57100
Target Sequence 
GTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAA
GAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGA
ACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGAT
TATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTT
TGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAA
TCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis