Browse Element(s) Details


Os.47315.1.S1_x_at

Description gb:AK107712.1
DB_XREF= gi:32992921
TID=Os.47315.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D11, full insert sequence.
FL= gb:AK107712.1 gb:AK110820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4489011/11C2 domain-containing protein, putative, expressed
LOC_Os02g570901/11C2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein
LOC_Os03g44850NANA3+25258466..25258900hypothetical protein
LOC_Os03g44860OsAffx.25545.1.S1_at11/113+25264911..25265282hypothetical protein
LOC_Os03g44870NANA3+25267520..25268561expressed protein
LOC_Os03g44880OsAffx.25546.1.S1_s_at11/113+25269898..25271593Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os03g44890Os.47315.1.S1_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890Os.47315.1.S2_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890OsAffx.30059.2.S1_x_at1/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44900Os.8777.1.S1_at11/113+25288519..25299205Not1 N-terminal domain, CCR4-Not complex component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47315.1.S1_x_at--796--8551Chr03:25284008..25284032 (25 bp)
TGGAGGTCTGCAACGCGCGGAACCT
LOC_Os03g44890
Os.47315.1.S1_x_at--49--3972Chr02:34952500..34952520 (21 bp)
GCGGAACCTCATGCCCAAGGACGGG
LOC_Os02g57090
Os.47315.1.S1_x_at--458--891Chr03:25283904..25283928 (25 bp)
AGGCCGCGGGATCTCAACCCGCAGT
LOC_Os03g44890
Os.47315.1.S1_x_at--975--5991Chr03:25283829..25283853 (25 bp)
GAGACGCTCGAGCTCAACCTCTACA
LOC_Os03g44890
Os.47315.1.S1_x_at--458--5911Chr03:25283820..25283844 (25 bp)
GAGCTCAACCTCTACAACGACAAGA
LOC_Os03g44890
Os.47315.1.S1_x_at--326--2631Chr03:25283814..25283838 (25 bp)
AACCTCTACAACGACAAGAAGGCCA
LOC_Os03g44890
Os.47315.1.S1_x_at--241--1451Chr03:25283675..25283699 (25 bp)
AGAAGCGGAGCGTTTTCTCGCAGAT
LOC_Os03g44890
Os.47315.1.S1_x_at--149--1631Chr03:25283672..25283696 (25 bp)
AGCGGAGCGTTTTCTCGCAGATCAA
LOC_Os03g44890
Os.47315.1.S1_x_at--825--7631Chr03:25283645..25283669 (25 bp)
GGGAGATCGGGCTCAAGATTTGGTT
LOC_Os03g44890
Os.47315.1.S1_x_at--1012--4131Chr03:25283587..25283611 (25 bp)
CGCCCCTGCGGATGGAAAGGCCGAT
LOC_Os03g44890
Os.47315.1.S1_x_at--1041--5571Chr03:25283573..25283597 (25 bp)
GAAAGGCCGATGCTGCCGCGGAGAA
LOC_Os03g44890
Target Sequence 
TGGAGGTCTGCAACGCGCGGAACCTCATGCCCAAGGACGGGCAGGGGACGGCGAGCGCCTACGCCGTCGTCGACTTCGAC
GGCCAGCGCCGCCGCACGGCCACCAGGCCGCGGGATCTCAACCCGCAGTGGGGGGAGCGCCTCGAGTTCCTCGTCCACGA
CCCCGACGCCATGNGCGCCGAGACGCTCGAGCTCAACCTCTACAACGACAAGAAGGCCATCGCCGCCACCGGGGGAGGCG
GCCGCCGCGGGGGCACGTTCCTCGGCAAGGTNNNNNNNNNNGNNNNNNNNNNNTNNNNGGCCGGGGACGAGGTGNNCGTC
TATTACCCGNNCGAGAAGCGGAGCGTTTTCTCGCAGATCAANNGGGGAGATCGGGCTCAAGATTTGGTTNGTCGATGAGC
CGCCGCCGCCGCCGCCACCCGCCGCCCCTGCGGATGGAAAGGCCGATGCTGCCGCGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47315.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis