Browse Element(s) Details


Os.8777.1.S1_at

Description gb:AK102019.1
DB_XREF= gi:32987228
TID=Os.8777.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080H16, full insert sequence.
FL= gb:AK102019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4490011/11Not1 N-terminal domain, CCR4-Not complex component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44860OsAffx.25545.1.S1_at11/113+25264911..25265282hypothetical protein
LOC_Os03g44870NANA3+25267520..25268561expressed protein
LOC_Os03g44880OsAffx.25546.1.S1_s_at11/113+25269898..25271593Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os03g44890Os.47315.1.S1_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890Os.47315.1.S2_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890OsAffx.30059.2.S1_x_at1/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44900Os.8777.1.S1_at11/113+25288519..25299205Not1 N-terminal domain, CCR4-Not complex component family protein, expressed
LOC_Os03g44910OsAffx.3516.1.S1_x_at11/113+25309533..25310171hypothetical protein
LOC_Os03g44920OsAffx.25550.2.S1_s_at11/113+25310883..25312427F-box domain containing protein
LOC_Os03g44920OsAffx.25550.1.S1_at11/113+25310883..25312427F-box domain containing protein
LOC_Os03g44930OsAffx.25548.1.S1_at11/113+25319731..25321556hypothetical protein
LOC_Os03g44934NANA3+25322949..25323476hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8777.1.S1_at--1112--10151Chr03:25298447..25298471 (25 bp)
TATCTACGGATTTGTTGTTCTTTGC
LOC_Os03g44900
Os.8777.1.S1_at--1095--7431Chr03:25298739..25298763 (25 bp)
GTGTACTTTGATTTCCATGTCATAG
LOC_Os03g44900
Os.8777.1.S1_at--485--291Chr03:25298760..25298784 (25 bp)
ATAGATGACGGCACAGGATCAGGAT
LOC_Os03g44900
Os.8777.1.S1_at--653--5451Chr03:25298972..25298996 (25 bp)
GAACGACTTCACATTTGAGTACAAC
LOC_Os03g44900
Os.8777.1.S1_at--493--10271Chr03:25298985..25299009 (25 bp)
TTTGAGTACAACTTCCTTGAGGATG
LOC_Os03g44900
Os.8777.1.S1_at--367--7591Chr03:25299048..25299072 (25 bp)
GGGCTAATCAAATCATTTTCACCAT
LOC_Os03g44900
Os.8777.1.S1_at--527--9671Chr03:25299066..25299090 (25 bp)
TCACCATTGTGAATCTTGTAACTTT
LOC_Os03g44900
Os.8777.1.S1_at--1091--7011Chr03:25299083..25299107 (25 bp)
GTAACTTTTAGAACGGAACTGCTGG
LOC_Os03g44900
Os.8777.1.S1_at--451--5471Chr03:25299114..25299138 (25 bp)
GAACACTTACAGATTAACTTTGTGG
LOC_Os03g44900
Os.8777.1.S1_at--1068--10471Chr03:25299145..25299169 (25 bp)
TTAAAAGCTGTTCTGTGCCTTCCTT
LOC_Os03g44900
Os.8777.1.S1_at--791--111Chr03:25299173..25299197 (25 bp)
ATTCATATTCATACACAATGGCCAA
LOC_Os03g44900
Target Sequence 
TATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAG
AAGCAATCGTGGAGATTTCACAGAAAGTACAATACTTGGTTCCAACGGCACGTGGAGCCACAAGTTACAACTGATGAGTA
TGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGGTGTCAGAGAATCAAGA
ACGACTTCACATTTGAGTACAACTTCCTTGAGGATGAGCTGTCAGTACAGACAAATTAGAGAGCCAGGATATTAGGGCTA
ATCAAATCATTTTCACCATTGTGAATCTTGTAACTTTTAGAACGGAACTGCTGGAATCTGGAACACTTACAGATTAACTT
TGTGGTTGGATTTAAAAGCTGTTCTGTGCCTTCCTTTCCATTCATATTCATACACAATGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis