Browse Element(s) Details


OsAffx.25546.1.S1_s_at

Description tigr:9631.m04342
TID=OsAffx.25546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative Cupin protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4488011/11Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g722901/11Germin-like protein subfamily 2 member 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein
LOC_Os03g44850NANA3+25258466..25258900hypothetical protein
LOC_Os03g44860OsAffx.25545.1.S1_at11/113+25264911..25265282hypothetical protein
LOC_Os03g44870NANA3+25267520..25268561expressed protein
LOC_Os03g44880OsAffx.25546.1.S1_s_at11/113+25269898..25271593Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os03g44890Os.47315.1.S1_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890Os.47315.1.S2_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890OsAffx.30059.2.S1_x_at1/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44900Os.8777.1.S1_at11/113+25288519..25299205Not1 N-terminal domain, CCR4-Not complex component family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25546.1.S1_s_at--343--10671Chr03:25271072..25271096 (25 bp)
TTCCAGAGGAACAGCGGCAACACGT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--1120--8151Chr03:25271079..25271103 (25 bp)
GGAACAGCGGCAACACGTCGGCGCT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--713--4152Chr03:25271253..25271277 (25 bp)
CGCCCAAATACTAGATTGCATGCAT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--568--3091Chr03:25271259..25271283 (25 bp)
AATACTAGATTGCATGCATACTGCA
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--252--851Chr03:25271292..25271316 (25 bp)
ATGGCAGCTGAGCTAAGCCCTACCG
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--1109--1551Chr03:25271302..25271326 (25 bp)
AGCTAAGCCCTACCGCGATAATAAT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--559--5651Chr03:25271318..25271342 (25 bp)
GATAATAATTAAGAGGGCGTACCGT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--462--8011Chr03:25271333..25271357 (25 bp)
GGCGTACCGTTAAGAAGTTTGTGAT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--999--4831Chr03:25271505..25271529 (25 bp)
GCTAGAGTAAAATTCGCTGTGCGAA
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--1007--10631Chr03:25271517..25271541 (25 bp)
TTCGCTGTGCGAATTCGTTTGGATT
LOC_Os03g44880
OsAffx.25546.1.S1_s_at--1140--4711Chr03:25271520..25271544 (25 bp)
GCTGTGCGAATTCGTTTGGATTTTT
LOC_Os03g44880
Target Sequence 
TTCCAGAGGAACAGCGGCAACACGTCGGCGCTCGCCATCGCCGCCTTCAACAGCCAGCTCCCCGGGACGCAGTCCATCGC
CGACACGCTCTTCGGCGCCGCGCCGCCGCTGCCGTCGGACACGCTGGCCAGGGCGTTCCAGGTCGACGGCGGCATGGTCG
AGTCCATCAAGTCCAAGTTCCCGCCCAAATACTAGATTGCATGCATACTGCAGGAACAAGATGGCAGCTGAGCTAAGCCC
TACCGCGATAATAATTAAGAGGGCGTACCGTTAAGAAGTTTGTGATTTGATTGACAGGATTTGTGTCAGTGTGTGTTTGT
GTTTGTGAGTCGTTTGATTTGGTTTGGTTTGTAATTTTTATTTTTATTAGAAAAATGCTTGTACGTTGCAACAGGTAAAT
GCTATTTTAATTTTGTTATTGTTGTATGGTTTAGCTAGAGTAAAATTCGCTGTGCGAATTCGTTTGGATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25546.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis