Browse Element(s) Details


Os.8666.1.S1_at

Description gb:AK060243.1
DB_XREF= gi:32970261
TID=Os.8666.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G01, full insert sequence.
FL= gb:AK060243.1 gb:AK099251.1 gb:AK106084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5711011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed
LOC_Os02g57090OsAffx.24903.1.S1_at11/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57090Os.47315.1.S1_x_at1/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8666.1.S1_at--237--7891Chr02:34962279..34962303 (25 bp)
GGTTCAACGGCATGGGCCTCTGCAC
LOC_Os02g57110
Os.8666.1.S1_at--698--4451Chr02:34962177..34962201 (25 bp)
GCCTCATCGTACAGCAGTTCATGCA
LOC_Os02g57110
Os.8666.1.S1_at--314--4831Chr02:34962091..34962115 (25 bp)
GCTCAACTCCGCAACTGATCAATAT
LOC_Os02g57110
Os.8666.1.S1_at--855--8831Chr02:34962076..34962100 (25 bp)
TGATCAATATCTCGCCACCATGATT
LOC_Os02g57110
Os.8666.1.S1_at--683--51Chr02:34962000..34962024 (25 bp)
ATTGATCTCTCTCCGTAATTTACTG
LOC_Os02g57110
Os.8666.1.S1_at--646--6531Chr02:34961968..34961992 (25 bp)
GATTTTTCAAGTGTTCGACGTACGT
LOC_Os02g57110
Os.8666.1.S1_at--948--6991Chr02:34961945..34961969 (25 bp)
GTACTCTACGTACGTCCGTGATTAG
LOC_Os02g57110
Os.8666.1.S1_at--1008--9991Chr02:34961899..34961923 (25 bp)
TAGCGTCCACATAAACCATATTTGA
LOC_Os02g57110
Os.8666.1.S1_at--894--10451Chr02:34961872..34961896 (25 bp)
TTAGCTCGATCATCATCCGGTCAGA
LOC_Os02g57110
Os.8666.1.S1_at--1124--7811Chr02:34961854..34961878 (25 bp)
GGTCAGATCGATTGCTCATCAGCTA
LOC_Os02g57110
Os.8666.1.S1_at--567--3371Chr02:34961835..34961859 (25 bp)
CAGCTAGTGTGTTTAATTACTCCTA
LOC_Os02g57110
Target Sequence 
GGTTCAACGGCATGGGCCTCTGCACCCTCGTCTCCAACCTCTGCGCCGACCGCGACTCGTACGTCTTCTGGGACGCCTTC
CACCCCACCGAGCGCGCCAACCGCCTCATCGTACAGCAGTTCATGCACGGCTCGCTCGACTACATCACCCCCATGAACCT
CAGCACCATCCTCAAGCTCGACCAACAAGCTCAACTCCGCAACTGATCAATATCTCGCCACCATGATTACAACCTGCATG
CATTATTGCAATCAATCAGAATGATCGTCAGATCGATGGATTGATCTCTCTCCGTAATTTACTGTCATNNNNNNNNNNNN
NNNNNTTGGATTTTTCAAGTGTTCGACGTACGTACTCTACGTACGTCCGTGATTAGTTTTAGTTTTTGCTAGATATATAG
CGTCCACATAAACCATATTTGAGCTTAGCTCGATCATCATCCGGTCAGATCGATTGCTCATCAGCTAGTGTGTTTAATTA
CTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis