Browse Element(s) Details


Os.54808.1.S1_at

Description gb:AK106810.1
DB_XREF= gi:32992019
TID=Os.54808.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C09, full insert sequence.
FL= gb:AK106810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5707011/113'-5' exoribonuclease CSL4 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed
LOC_Os02g57090OsAffx.24903.1.S1_at11/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57090Os.47315.1.S1_x_at1/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54808.1.S1_at--1160--10111Chr02:34936672..34936696 (25 bp)
TATGTTTCAGTCATACCGACCTGGT
LOC_Os02g57070
Os.54808.1.S1_at--780--8831Chr02:34936651..34936672 (22 bp)
TGATATTGTCAGAGCCCTGGTTCTC
LOC_Os02g57070
Os.54808.1.S1_at--1076--5171Chr02:34936419..34936443 (25 bp)
GCAAGGGCATATTACCTTTCCACTG
LOC_Os02g57070
Os.54808.1.S1_at--532--5471Chr02:34936386..34936410 (25 bp)
GAACTCGGAGTTGTTTCTGCACAAA
LOC_Os02g57070
Os.54808.1.S1_at--1103--2551Chr02:34936215..34936235 (21 bp)
AACTGGTGGTACACTAGTCCCGATC
LOC_Os02g57070
Os.54808.1.S1_at--1104--2792Chr09:19168106..19168134 (23 bp)
AAGATGGTCCTCATGCGTGTATCAA
NONE
Os.54808.1.S1_at--573--1571Chr02:34935680..34935704 (25 bp)
AGCTCACGTCGCCACTGGATTTAGA
LOC_Os02g57070
Os.54808.1.S1_at--332--1031Chr02:34935614..34935638 (25 bp)
AGGTCAAGGTTTTGCTCTGTGTTGC
LOC_Os02g57070
Os.54808.1.S1_at--310--3891Chr02:34935598..34935622 (25 bp)
CTGTGTTGCTGAGGCTTCGGTACAA
LOC_Os02g57070
Os.54808.1.S1_at--73--8131Chr02:34935562..34935586 (25 bp)
GGACTGCATTGTTGGGATCTTTGTT
LOC_Os02g57070
Os.54808.1.S1_at--1050--3451Chr02:34935485..34935509 (25 bp)
CAGTGTATCTGTGTTCCCAAGTGTT
LOC_Os02g57070
Target Sequence 
TATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTTCTCTCTCTTGGTGATGCAAGGGCATATTACCTTT
CCACTGCCCAGAATGAACTCGGAGTTGTTTCTGCACAAAGTATAACTGGTGGTACACTAGTCCCGATCAGTTGGACCGAG
ATGCAATGCGAATTGACGGGCCAAATAGAGCAAAGGAAAGTTGCAAAAGTGGAATAGATTTGGTGACTTTGCTAACAGAA
AAGGTTCATGATGGCCTACAATGTGTTGACCAACAAAGATGGTCCTCATGCGTGTATCAAAAGCTTGCGACGCTCAAGCT
CACGTCGCCACTGGATTTAGAGTTTTGGGTTAGCGATGGTCCATTAGGATTCTAAATGATGTAGGTCAAGGTTTTGCTCT
GTGTTGCTGAGGCTTCGGTACAACTGAAGGTTTTGGACTGCATTGTTGGGATCTTTGTTGTTCTTACATATGGGGGGTTC
AGAATTTTCTCGATCAATACTGTAAAATTCCCAGTGTATCTGTGTTCCCAAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis