Browse Element(s) Details

Os.407.1.S1_at

Description

gb:AK099733.1
DB_XREF= gi:32984942
TID=Os.407.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089P19, full insert sequence.
FL= gb:AK099733.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g57040	11/11	Alcohol dehydrogenase class III, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g56950	Os.52320.1.S1_at	9/11	2	+	34898357..34904943	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950	OsAffx.3091.1.S1_at	6/11	2	+	34898357..34904943	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960	Os.57452.1.S1_x_at	11/11	2	+	34905178..34907616	60S ribosomal protein L23, putative, expressed
LOC_Os02g56960	Os.12109.1.S1_at	11/11	2	+	34905178..34907616	60S ribosomal protein L23, putative, expressed
LOC_Os02g56960	OsAffx.27834.1.S1_at	1/11	2	+	34905178..34907616	60S ribosomal protein L23, putative, expressed
LOC_Os02g56970	Os.56323.1.S1_at	11/11	2	+	34907845..34909606	glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980	OsAffx.24902.1.S1_s_at	11/11	2	+	34909928..34912117	nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990	Os.8300.1.S1_at	11/11	2	+	34912253..34914009	60S ribosomal protein L37, putative, expressed
LOC_Os02g56990	Os.8300.1.S1_s_at	10/11	2	+	34912253..34914009	60S ribosomal protein L37, putative, expressed
LOC_Os02g57000	Os.55773.1.S1_at	11/11	2	+	34914673..34915867	C2 domain containing protein, expressed
LOC_Os02g57010	Os.52459.1.S1_at	11/11	2	+	34916635..34918940	29 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010	Os.32596.1.S1_x_at	1/11	2	+	34916635..34918940	29 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020	Os.51208.1.S1_s_at	11/11	2	+	34919502..34920398	expressed protein
LOC_Os02g57030	OsAffx.12677.1.S1_at	11/11	2	+	34920772..34923516	expressed protein
LOC_Os02g57030	Os.5432.1.A1_at	10/11	2	+	34920772..34923516	expressed protein
LOC_Os02g57030	Os.28544.2.S1_x_at	1/11	2	+	34920772..34923516	expressed protein
LOC_Os02g57040	Os.407.1.S1_at	11/11	2	+	34924454..34928296	Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050	Os.18150.1.S1_at	11/11	2	+	34928691..34931108	diphthamide synthesis protein, putative, expressed
LOC_Os02g57060	Os.9385.1.S1_at	11/11	2	+	34932239..34935532	D1 protease precursor, putative, expressed
LOC_Os02g57070	Os.54808.1.S1_at	11/11	2	+	34935197..34938206	3'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070	Os.11168.1.S1_at	1/11	2	+	34935197..34938206	3'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080	Os.52783.1.A1_x_at	11/11	2	+	34939213..34946140	protein kinase family protein, putative, expressed
LOC_Os02g57090	OsAffx.24903.1.S1_at	11/11	2	+	34952452..34955451	C2 domain-containing protein, putative
LOC_Os02g57090	Os.47315.1.S1_x_at	1/11	2	+	34952452..34955451	C2 domain-containing protein, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0001666	biological_process	response to hypoxia
GO:0045333	biological_process	cellular respiration
GO:0004022	molecular_function	alcohol dehydrogenase activity
GO:0004327	molecular_function	formaldehyde dehydrogenase (glutathione) activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.407.1.S1_at--145--103	1	Chr02:34927268..34927292 (25 bp)	AGGTCTGCATTGGAGTGCTGCCACA	LOC_Os02g57040
Os.407.1.S1_at--987--543	1	Chr02:34927624..34927648 (25 bp)	GAACCTCTGTCATCGTTGGTGTAGC	LOC_Os02g57040
Os.407.1.S1_at--748--517	1	Chr02:34927658..34927682 (25 bp)	GCAAGAAATCTCTACACGACCATTC	LOC_Os02g57040
Os.407.1.S1_at--1084--1047	1	Chr02:34927728..34927752 (25 bp)	TTCAAGAGCCGAAGCCAAGTTCCAT	LOC_Os02g57040
Os.407.1.S1_at--204--245	1	Chr02:34927924..34927948 (25 bp)	AACAAGGCGTTTGACCTGCTGCATG	LOC_Os02g57040
Os.407.1.S1_at--573--71	1	Chr02:34927994..34928018 (25 bp)	ATGATGGTTCATCTGCTTTTGGCTG	LOC_Os02g57040
Os.407.1.S1_at--496--1041	1	Chr02:34928010..34928034 (25 bp)	TTTTGGCTGTGCTTCTGAGCTATGT	LOC_Os02g57040
Os.407.1.S1_at--748--891	1	Chr02:34928025..34928049 (25 bp)	TGAGCTATGTCACGCCAAATTGTAA	LOC_Os02g57040
Os.407.1.S1_at--473--1081	1	Chr02:34928044..34928068 (25 bp)	TTGTAATCCAGATCTACCAGCCTTG	LOC_Os02g57040
Os.407.1.S1_at--904--313	1	Chr02:34928076..34928100 (25 bp)	AATTATTCTGCTCGTTTCGCTTAGA	LOC_Os02g57040
Os.407.1.S1_at--300--389	1	Chr02:34928112..34928136 (25 bp)	CTGTGACACCACTCTGCTATAATAA	LOC_Os02g57040

Target Sequence

AGGTCTGCATTGGAGTGCTGCCACAAGGGCTGGGGAACCTCTGTCATCGTTGGTGTAGCTGCTTCTGGGCAAGAAATCTC
TACACGACCATTCCAGCTCGTCACTGGCCGTGTCTGGAAGGGAACAGCTTTCGGCGGTTTCAAGAGCCGAAGCCAAGTTC
CATGGCTCGTTGAGAAGTACTTGAACAAGGAAATCAAGGTGGACGAGTACGTTACTCACAGCATGAACCTGACTGACATC
AACAAGGCGTTTGACCTGCTGCATGAAGGTGGCTGCCTGCGGTGTGTTCTGGCAACTGATAAATGAACCGATGATGGTTC
ATCTGCTTTTGGCTGTGCTTCTGAGCTATGTCACGCCAAATTGTAATCCAGATCTACCAGCCTTGGAAATTGAATTATTC
TGCTCGTTTCGCTTAGAAGCACTTTGAACTGTGACACCACTCTGCTATAATAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis