Browse Element(s) Details


Os.52459.1.S1_at

Description gb:AK067252.1
DB_XREF= gi:32977270
TID=Os.52459.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098L06, full insert sequence.
FL= gb:AK104489.1 gb:AK067252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5701011/1129 kDa ribonucleoprotein, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52459.1.S1_at--621--9951Chr02:34917950..34917974 (25 bp)
TACCCGGAGACTGAGCACAAGCTGT
LOC_Os02g57010
Os.52459.1.S1_at--163--7191Chr02:34917977..34918001 (25 bp)
GTCGGCAACCTGTCGTGGACGGTCA
LOC_Os02g57010
Os.52459.1.S1_at--682--8531Chr02:34917992..34918016 (25 bp)
TGGACGGTCACCTCGGAGATGCTGA
LOC_Os02g57010
Os.52459.1.S1_at--185--1311Chr02:34918020..34918044 (25 bp)
AGATGTTCCAGAAGTGCGGCAACGT
LOC_Os02g57010
Os.52459.1.S1_at--1158--8551Chr02:34918128..34918152 (25 bp)
TGGATGAAGCTCTTTCCTCGCTCAA
LOC_Os02g57010
Os.52459.1.S1_at--916--2911Chr02:34918508..34918532 (25 bp)
AAGGCAGGGAGATCCGGGTCAACCT
LOC_Os02g57010
Os.52459.1.S1_at--291--7091Chr02:34918525..34918549 (25 bp)
GTCAACCTCGCCCTTGGAAAGAAAT
LOC_Os02g57010
Os.52459.1.S1_at--1074--10031Chr02:34918563..34918587 (25 bp)
TAGATTTACTTCACATGCACAGGAG
LOC_Os02g57010
Os.52459.1.S1_at--504--5191Chr02:34918604..34918628 (25 bp)
GCAATGCTGCCTTCAGATGCGATTT
LOC_Os02g57010
Os.52459.1.S1_at--519--6851Chr02:34918658..34918682 (25 bp)
GTTTGAGCGCATCGCAAGACGGCAA
LOC_Os02g57010
Os.52459.1.S1_at--331--1171Chr02:34918853..34918877 (25 bp)
AGTCAGTTCCATTCTCTTGGAGCTG
LOC_Os02g57010
Target Sequence 
TACCCGGAGACTGAGCACAAGCTGTTCGTCGGCAACCTGTCGTGGACGGTCACCTCGGAGATGCTGACGGAGATGTTCCA
GAAGTGCGGCAACGTGGTCGGCGCCCGGGTGCTCTACGACGGCGAGACCGGCCGGTCCCGTGGCTACGGCTTCGTCTGCT
ACTCCACCAAGGAGGAGATGGATGAAGCTCTTTCCTCGCTCAATGGAACGGAACTAGAAGGCAGGGAGATCCGGGTCAAC
CTCGCCCTTGGAAAGAAATAATCAAAGAGTAATAGATTTACTTCACATGCACAGGAGAAACTTGCAATACAATGCAATGC
TGCCTTCAGATGCGATTTTCAGNCAACCATGGATGCAGCGATTACTTGTTTGAGCGCATCGCAAGACGGCAAGANCAGGC
ACAGGAAGAATGTATTGTTCTGAGTTACAGCAGATGTATCTCTTTTTTTTTAACGAATCAGATGTATCTTTTGTATGCAT
GGGAAATTTATTAGTTTCTATCAGTCGTTTATCTGATAGAAGCTTGACTGAACATTGAACAGTTTTAGTCTGCTGGGGTT
ATCAGTCAGTTCCATTCTCTTGGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis