Browse Element(s) Details


Os.8300.1.S1_s_at

Description gb:CR287829
DB_XREF= gi:44674395
DB_XREF=CR287829
CLONE=y620b01p5
TID=Os.8300.1
CNT=16
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8300 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566535.1 (A.thaliana) putative ribosomal protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5699010/1160S ribosomal protein L37, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8300.1.S1_s_at--124--10391Chr02:34913877..34913901 (25 bp)
TTGTTGCTTAATTTATCGTAACTCT
LOC_Os02g56990
Os.8300.1.S1_s_at--1126--9171Chr02:34913906..34913930 (25 bp)
TCCTAAATGAGGCAAACGATGTCTG
LOC_Os02g56990
Os.8300.1.S1_s_at--102--1891Chr02:34913921..34913945 (25 bp)
ACGATGTCTGGTTTTCTGTTATTTT
LOC_Os02g56990
Os.8300.1.S1_s_at--1078--6251Chr02:34913923..34913947 (25 bp)
GATGTCTGGTTTTCTGTTATTTTGC
LOC_Os02g56990
Os.8300.1.S1_s_at--1061--10591Chr02:34913934..34913958 (25 bp)
TTCTGTTATTTTGCATCCTGGATGT
LOC_Os02g56990
Os.8300.1.S1_s_at--870--4951Chr02:34913946..34913970 (25 bp)
GCATCCTGGATGTTAATCCTTGAGT
LOC_Os02g56990
Os.8300.1.S1_s_at--579--7991Chr02:34913953..34913977 (25 bp)
GGATGTTAATCCTTGAGTTTTGAAT
LOC_Os02g56990
Os.8300.1.S1_s_at--177--9771Chr02:34913959..34913983 (25 bp)
TAATCCTTGAGTTTTGAATGTTAGA
LOC_Os02g56990
Os.8300.1.S1_s_at--1076--5251Chr02:34913974..34913998 (25 bp)
GAATGTTAGATCGTTTTATCCGTTA
LOC_Os02g56990
Os.8300.1.S1_s_at--815--10031Chr02:34913980..34914004 (25 bp)
TAGATCGTTTTATCCGTTATCATCG
LOC_Os02g56990
Os.8300.1.S1_s_at--34--9531Chr02:34914006..34914030 (25 bp)
TCTCATACGCATTTATCGTTGCTGT
NONE
Target Sequence 
TTGTTGCTTAATTTATCGTAACTCTNNGTTCCTAAATGAGGCAAACGATGTCTGGTTTTCTGTTATTTTGCATCCTGGAT
GTTAATCCTTGAGTTTTGAATGTTAGATCGTTTTATCCGTTATCATCGGTCTCATACGCATTTATCGTTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8300.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis