Browse Element(s) Details


Os.27093.1.S1_at

Description gb:AK068166.1
DB_XREF= gi:32978184
TID=Os.27093.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134I09, full insert sequence.
FL= gb:AK104915.1 gb:AK068166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5692011/11CER1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27093.1.S1_at--205--1411Chr02:34884402..34884426 (25 bp)
AGAAAGGATCCCATTTCGTGCCGTA
LOC_Os02g56920
Os.27093.1.S1_at--260--9911Chr02:34884318..34884342 (25 bp)
TACTCGTCCCTGAATCCTTCGAAAA
LOC_Os02g56920
Os.27093.1.S1_at--54--5531Chr02:34884302..34884322 (21 bp)
GAAAACCTTCACGTTTGCGAGAATT
LOC_Os02g56920
Os.27093.1.S1_at--195--4491Chr02:34883992..34884016 (25 bp)
GCCGGTGGCCGGATCGAAGCAACCT
LOC_Os02g56920
Os.27093.1.S1_at--672--2731Chr02:34883976..34884000 (25 bp)
AAGCAACCTGGCCTGATTGTGTGAT
LOC_Os02g56920
Os.27093.1.S1_at--1138--10831Chr02:34883960..34883984 (25 bp)
TTGTGTGATCTTGTGTGTGCTTCTT
LOC_Os02g56920
Os.27093.1.S1_at--831--9071Chr02:34883943..34883967 (25 bp)
TGCTTCTTCGCTCGGTTGATATATA
LOC_Os02g56920
Os.27093.1.S1_at--78--991Chr02:34883919..34883943 (25 bp)
AGGAGTATCTCCGTGTGTGTTATGA
LOC_Os02g56920
Os.27093.1.S1_at--772--7551Chr02:34883892..34883916 (25 bp)
GGGCCAGATTAATATCCAGCTATAA
LOC_Os02g56920
Os.27093.1.S1_at--48--1611Chr02:34883860..34883884 (25 bp)
AGCTGTATTGTTAATTCTCTGCCGG
LOC_Os02g56920
Os.27093.1.S1_at--986--9511Chr02:34883845..34883869 (25 bp)
TCTCTGCCGGTGTCATAATCTATTG
LOC_Os02g56920
Target Sequence 
AGAAAGGATCCCATTTCGTGCCGTACTCGCAGTTCCCTCCCAACAAGGCCCGCAACGACTGCGTCTACCACTGCACCCCG
GCTCTACTCGTCCCTGAATCCTTCGAAAACCTTCACGTTTGCGAGAATTGGTTGCCGAGGAGGGTGATGAGCGCGTGGCG
GGCGGCGGGGATCGTTCACGCGCTGGAGAAGTGGGACGGGCACGAGTGCGGCGGCAGGGTCACCGGCGTGCAGAAGGCGT
GGAGCGCGGCGCTGGCACGGGGATTCCGGCCATACGACGACCACCACCACCCCGGCATCACCCATGATGGCCGTGGCGGG
CTGTGACCGGCCGGTGGCCGGATCGAAGCAACCTGGCCTGATTGTGTGATCTTGTGTGTGCTTCTTCGCTCGGTTGATAT
ATAGGAGTATCTCCGTGTGTGTTATGATGGGGCCAGATTAATATCCAGCTATAAAATCCCAAGCTGTATTGTTAATTCTC
TGCCGGTGTCATAATCTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis