Browse Element(s) Details


Os.51812.1.S1_at

Description gb:AK103520.1
DB_XREF= gi:32988729
TID=Os.51812.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131I05, full insert sequence.
FL= gb:AK063819.1 gb:AK103520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5688011/11Transcriptional corepressor LEUNIG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os02g56870OsAffx.12675.1.S1_at11/112+34855907..34856271hypothetical protein
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51812.1.S1_at--555--10831Chr02:34857688..34857712 (25 bp)
TTGTGTGTTCCACCCAAGCTATGCC
LOC_Os02g56880
Os.51812.1.S1_at--777--2691Chr02:34857673..34857697 (25 bp)
AAGCTATGCCAATCTCCTTGTTATT
LOC_Os02g56880
Os.51812.1.S1_at--537--6471Chr02:34857166..34857190 (25 bp)
GATACAAGCCCATGAAGGTCTAATT
LOC_Os02g56880
Os.51812.1.S1_at--816--3371Chr02:34857131..34857155 (25 bp)
CGCAATCGCCAGTGAACGGGACGGT
LOC_Os02g56880
Os.51812.1.S1_at--309--1951Chr02:34857015..34857039 (25 bp)
ACTGGATTTCTTCAGCCTAGGCTAG
LOC_Os02g56880
Os.51812.1.S1_at--320--1251Chr02:34856956..34856980 (25 bp)
AGTTGTGTTACTATCTCAGAGGCAA
LOC_Os02g56880
Os.51812.1.S1_at--929--4631Chr02:34856910..34856934 (25 bp)
GCGATTGTCGCGGTTGAGCTGTTCA
LOC_Os02g56880
Os.51812.1.S1_at--401--8911Chr02:34856896..34856920 (25 bp)
TGAGCTGTTCAGTGCGTATTGCAGT
LOC_Os02g56880
Os.51812.1.S1_at--1012--9831Chr02:34856776..34856800 (25 bp)
TAAAGTTGGCTCTCTGTTTCATGTT
LOC_Os02g56880
Os.51812.1.S1_at--1000--6791Chr02:34856708..34856732 (25 bp)
GTTTTAATGGGAACTCGCTGCAATT
LOC_Os02g56880
Os.51812.1.S1_at--612--4131Chr02:34856693..34856717 (25 bp)
CGCTGCAATTTGTCCGGCGGTTGAT
LOC_Os02g56880
Target Sequence 
TTGTGTGTTCCACCCAAGCTATGCCAATCTCCTTGTTATTGGAGGCTACCAGTCCCTGGAGCTATGGAACATGGTAAAGA
ACCAGAGCATGACGATACAAGCCCATGAAGGTCTAATTGCGGCCTTGGCGCAATCGCCAGTGAACGGGACGGTGGCTTCT
GCGAGCCACGACAACTCTGTCAAGTTGTGGAAGTAACAACAATAACGTACCTAGAGATAAGAATAGCTGTTCCAGGTAAT
TGATACTGGATTTCTTCAGCCTAGGCTAGTCATAGAATGGAGGTGAGTTTGATGTACTGGTTGAGTTGTGTTACTATCTC
AGAGGCAAATAAGGAAGAGTAGGAGCCGGGCGATTGTCGCGGTTGAGCTGTTCAGTGCGTATTGCAGTGAGTTTGTGGGA
GGGGCTGTTTCTTTTTTTTTTTTTTTTTTTACCTTGATGATAGATGTTGATGTAGCACAAAAGGAAGATAAGGAACGAAG
GCCTAAAGTTGGCTCTCTGTTTCATGTTGTTAATGTTCTAGTATGAGATGTAAAATGTAACAATATTCGGTGTTTTAATG
GGAACTCGCTGCAATTTGTCCGGCGGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis