Browse Element(s) Details


Os.17584.1.S1_at

Description gb:AK107210.1
DB_XREF= gi:32992419
TID=Os.17584.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C01, full insert sequence.
FL= gb:AK107210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5686011/11Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os02g56870OsAffx.12675.1.S1_at11/112+34855907..34856271hypothetical protein
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17584.1.S1_at--75--3891Chr02:34849129..34849153 (25 bp)
CTGTCCTACATGGAGGCGAAGCGGC
LOC_Os02g56860
Os.17584.1.S1_at--397--5831Chr02:34849168..34849192 (25 bp)
GACCGGGTGCTCATGGTGACCTTCG
LOC_Os02g56860
Os.17584.1.S1_at--519--2151Chr02:34849211..34849235 (25 bp)
ACAGCAGCTACTGGGTGGTGACCAA
LOC_Os02g56860
Os.17584.1.S1_at--1010--5471Chr02:34849290..34849314 (25 bp)
GAACTTGGTCAACCCTTACATGGAG
LOC_Os02g56860
Os.17584.1.S1_at--794--9871Chr02:34849306..34849330 (25 bp)
TACATGGAGAAGTTCGGCTGGGTCA
LOC_Os02g56860
Os.17584.1.S1_at--819--2571Chr02:34849330..34849354 (25 bp)
AACGACCTTCCCAGCCAGGGTCAGG
LOC_Os02g56860
Os.17584.1.S1_at--676--7091Chr02:34849349..34849373 (25 bp)
GTCAGGGAGGCGCATTTCCCTTCTT
LOC_Os02g56860
Os.17584.1.S1_at--559--151Chr02:34849425..34849449 (25 bp)
ATTATTACTACCATGAATCCGTATA
LOC_Os02g56860
Os.17584.1.S1_at--362--5031Chr02:34849459..34849483 (25 bp)
GCAGTTCTGACTGTGGTTTCTTAGT
LOC_Os02g56860
Os.17584.1.S1_at--711--8971Chr02:34849541..34849565 (25 bp)
TGAAAACAATCGTCACACAGGCTGT
LOC_Os02g56860
Os.17584.1.S1_at--134--10151Chr02:34849652..34849676 (25 bp)
TATCCCTTTGGTATATATTTTTGCC
LOC_Os02g56860
Target Sequence 
CTGTCCTACATGGAGGCGAAGCGGCGGCTCAACGCCGGCGACCGGGTGCTCATGGTGACCTTCGGGTCGGGGTTCAAGTG
CAACAGCAGCTACTGGGTGGTGACCAAGGACCTCGCCGACGCCGGCGCCTGGGAAGATTGCATCCACGACTACCCGCCGG
CGAACTTGGTCAACCCTTACATGGAGAAGTTCGGCTGGGTCAACGACCTTCCCAGCCAGGGTCAGGGAGGCGCATTTCCC
TTCTTTTAATTAATTATTACTATTACTGGTAGTACTGATTAATTTATACTCAATTTATTATTACTACCATGAATCCGTAT
AATACATATAGCAGTTCTGACTGTGGTTTCTTAGTTAATTAAGCCGTCAAAATTAAGAAACTACAGTCAGAATTGACTCA
ACTGTTAAAACTTGAAAACAATCGTCACACAGGCTGTGTGTAAGGGACNTGTATGTACGGTGTTTATACNGGTATTTTTT
TGTGGTTTTATGTGTTATTACAATTTCNTTTTTTTNNGTNTNTCTTATCCCTTTGGTATATATTTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis