Browse Element(s) Details


Os.56351.1.S1_at

Description gb:AK109908.1
DB_XREF= gi:32995117
TID=Os.56351.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G07, full insert sequence.
FL= gb:AK109908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4585011/11B3 DNA binding domain containing protein, expressed
LOC_Os02g568401/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45840OsAffx.24744.3.S1_at11/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45840OsAffx.16430.1.S1_at2/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45850Os.56351.1.S1_at11/112+27926962..27928820B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56351.1.S1_at--1129--7271Chr02:27927492..27927516 (25 bp)
GTGGTGCTCGACTCGGTTCCGGTCA
LOC_Os02g45850
Os.56351.1.S1_at--780--3931Chr02:27927376..27927400 (25 bp)
CGGCGAGTCGAGCAATCATGGCAAT
LOC_Os02g45850
Os.56351.1.S1_at--204--3011Chr02:27927354..27927378 (25 bp)
AATGCACTGTCATTGCAGACGCCCG
LOC_Os02g45850
Os.56351.1.S1_at--88--991Chr02:27927321..27927345 (25 bp)
AGGAGGGATCCAACACTGCGGCTGC
LOC_Os02g45850
Os.56351.1.S1_at--1039--7131Chr02:27927232..27927256 (25 bp)
GTCTTCCTCCAAGAGGGACGCGCAT
LOC_Os02g45850
Os.56351.1.S1_at--632--1071Chr02:27927219..27927243 (25 bp)
AGGGACGCGCATTCGGCCTTGGATC
LOC_Os02g45850
Os.56351.1.S1_at--272--7971Chr02:27927199..27927223 (25 bp)
GGATCTCGATCTGTAGCGACCTAAA
LOC_Os02g45850
Os.56351.1.S1_at--1127--1192Chr02:34829804..34830051 (25 bp)
AGTTCATCAACGATTCTTTTTTCTT
LOC_Os02g56840
Os.56351.1.S1_at--672--9571Chr02:27927106..27927130 (25 bp)
TCTTCTCGCAGCAACATCGATCTCA
LOC_Os02g45850
Os.56351.1.S1_at--525--6411Chr02:27927088..27927112 (25 bp)
GATCTCACTTTCTCTTGTGATTCCA
LOC_Os02g45850
Os.56351.1.S1_at--690--6611Chr02:27927014..27927038 (25 bp)
GTTGGCCACTTAATTGGAATCTTTC
LOC_Os02g45850
Target Sequence 
GTGGTGCTCGACTCGGTTCCGGTCATCGAGAGCCCCACGACGGCCGCGAAGCGCGTGCGGCTGTTCGGCGTGAACCTCGA
CAACCCGCATGCCGGCGGCGGCGGCGGCGCCGCCGCCGGCGAGTCGAGCAATCATGGCAATGCACTGTCATTGCAGACGC
CCGCGTGGATGAGGAGGGATCCAACACTGCGGCTGCTGGAATTGCCTCCTCACCACCACCATGGCGCCGAGTCGTCCGCT
GCATCGTCTCCGTCGTCGTCGTCTTCCTCCAAGAGGGACGCGCATTCGGCCTTGGATCTCGATCTGTAGCGACCTAAAGA
GAGAAAAACAAAGGAAAGTTCATCAACGATTCTTTTTTCTTCTTCTGTTTTGATTTGGTTTGTTCTTCTTCTCGCAGCAA
CATCGATCTCACTTTCTCTTGTGATTCCATTATAACCTGAAATTTGATGACAGCATTAGGATTTGACATTTTTGTTTTGT
TGGCCACTTAATTGGAATCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis