Browse Element(s) Details


Os.57549.1.S1_s_at

Description gb:AF150080.1
DB_XREF= gi:5107148
GEN=TIM13
TID=Os.57549.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57549 (NCBI UniGene Cluster)
DEF=Oryza sativa small zinc finger-like protein (TIM13) mRNA, complete cds.
PROD=small zinc finger-like protein
FL= gb:AF150080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g458202/11Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45780Os.9558.1.S1_s_at11/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45780Os.14237.1.S1_at1/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45840OsAffx.24744.3.S1_at11/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45840OsAffx.16430.1.S1_at2/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45850Os.56351.1.S1_at11/112+27926962..27928820B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57549.1.S1_s_at--405--9131Chr02:27906113..27906137 (25 bp)
TGCTGGAGAGCGCTCTTCAACAACC
NONE
Os.57549.1.S1_s_at--778--4711Chr02:27906112..27906136 (25 bp)
GCTGGAGAGCGCTCTTCAACAACCG
NONE
Os.57549.1.S1_s_at--334--3911Chr02:27906111..27906135 (25 bp)
CTGGAGAGCGCTCTTCAACAACCGG
NONE
Os.57549.1.S1_s_at--1054--8631Chr02:27906056..27906080 (25 bp)
TGGGAAGCCGGCATGGACTCCTTCT
NONE
Os.57549.1.S1_s_at--845--7611Chr02:27906055..27906079 (25 bp)
GGGAAGCCGGCATGGACTCCTTCTC
NONE
Os.57549.1.S1_s_at--88--8191Chr02:27906054..27906078 (25 bp)
GGAAGCCGGCATGGACTCCTTCTCG
NONE
Os.57549.1.S1_s_at--972--5411Chr02:27906053..27906077 (25 bp)
GAAGCCGGCATGGACTCCTTCTCGT
NONE
Os.57549.1.S1_s_at--778--2651Chr02:27906052..27906076 (25 bp)
AAGCCGGCATGGACTCCTTCTCGTC
NONE
Os.57549.1.S1_s_at--56--4491Chr02:27906050..27906074 (25 bp)
GCCGGCATGGACTCCTTCTCGTCGT
NONE
Os.57549.1.S1_s_at--1069--7771Chr02:27906019..27906043 (25 bp)
GGTCGCCCCCCAATACGGAGGCGCT
LOC_Os02g45820
Os.57549.1.S1_s_at--523--8391Chr02:27905979..27906003 (25 bp)
GGCGCAGCTCGCTCAGGCCTACGCC
LOC_Os02g45820
Target Sequence 
TGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTT
CTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57549.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis