Browse Element(s) Details


Os.9558.1.S1_s_at

Description gb:AK107937.1
DB_XREF= gi:32993146
TID=Os.9558.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A09, full insert sequence.
FL= gb:AK107937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4578011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45770Os.1313.1.S1_at11/112+27870110..27878201Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os02g45780Os.9558.1.S1_s_at11/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45780Os.14237.1.S1_at1/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010200biological_processresponse to chitin
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9558.1.S1_s_at--448--7351Chr02:27881723..27881747 (25 bp)
GTGAATCAATATTTGGCCCGCGCGA
LOC_Os02g45780
Os.9558.1.S1_s_at--1048--5231Chr02:27881721..27881745 (25 bp)
GAATCAATATTTGGCCCGCGCGACC
LOC_Os02g45780
Os.9558.1.S1_s_at--980--5211Chr02:27881519..27881543 (25 bp)
GAATATATCGATGATTAGACGGTAG
LOC_Os02g45780
Os.9558.1.S1_s_at--199--8411Chr02:27881451..27881475 (25 bp)
GGCCTGGCACCTGGCATGATCATTG
LOC_Os02g45780
Os.9558.1.S1_s_at--807--3911Chr02:27881448..27881472 (25 bp)
CTGGCACCTGGCATGATCATTGGGA
LOC_Os02g45780
Os.9558.1.S1_s_at--312--4271Chr02:27881442..27881466 (25 bp)
CCTGGCATGATCATTGGGAGGTTCA
LOC_Os02g45780
Os.9558.1.S1_s_at--358--9591Chr02:27881432..27881456 (25 bp)
TCATTGGGAGGTTCATGTAATTACT
LOC_Os02g45780
Os.9558.1.S1_s_at--87--3151Chr02:27881414..27881438 (25 bp)
AATTACTGCGATGATTAGATACTGC
LOC_Os02g45780
Os.9558.1.S1_s_at--313--4631Chr02:27881407..27881431 (25 bp)
GCGATGATTAGATACTGCATGTAAG
LOC_Os02g45780
Os.9558.1.S1_s_at--514--3071Chr02:27881380..27881404 (25 bp)
AATCATGTCATAGAGATAATACACC
LOC_Os02g45780
Os.9558.1.S1_s_at--840--3311Chr02:27881349..27881373 (25 bp)
CAGTGGTATAATGATAAACGGTTCA
LOC_Os02g45780
Target Sequence 
GTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGC
CTAAGCTAGCTTACTGCTGCTGTTAANCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGA
GGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAAT
TAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGA
TGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9558.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis