Browse Element(s) Details


Os.49863.1.S1_at

Description gb:AK112090.1
DB_XREF= gi:37988753
TID=Os.49863.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H12, full insert sequence.
FL= gb:AK112090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4581010/11TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45770Os.1313.1.S1_at11/112+27870110..27878201Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os02g45780Os.9558.1.S1_s_at11/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45780Os.14237.1.S1_at1/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45840OsAffx.24744.3.S1_at11/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45840OsAffx.16430.1.S1_at2/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45850Os.56351.1.S1_at11/112+27926962..27928820B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0045165biological_processcell fate commitment
GO:0000166molecular_functionnucleotide binding
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49863.1.S1_at--276--5071Chr02:27902295..27902319 (25 bp)
GCAGCTTACCCGGAGTGGATATCGA
LOC_Os02g45810
Os.49863.1.S1_at--1009--5491Chr02:27902260..27902284 (25 bp)
GAACAAGGTCCAGCTTCTCAGGGTC
LOC_Os02g45810
Os.49863.1.S1_at--1036--1031NONE
AGGGTCCGACGAGATGTTTTCTGAA
NONE
Os.49863.1.S1_at--343--7971Chr02:27901008..27901032 (25 bp)
GGATGTTCGACTCTGAAGCCTTGGC
LOC_Os02g45810
Os.49863.1.S1_at--921--6831Chr02:27900983..27901007 (25 bp)
GTTTCTTCTATTCCATCAGTTCACA
LOC_Os02g45810
Os.49863.1.S1_at--723--7451Chr02:27900957..27900981 (25 bp)
GTGTCTTATGTTGGTGATCTCTTGA
LOC_Os02g45810
Os.49863.1.S1_at--228--7931Chr02:27900876..27900900 (25 bp)
GGATTGATCTTGTGGCCAGCTTTAA
LOC_Os02g45810
Os.49863.1.S1_at--531--8571Chr02:27900770..27900794 (25 bp)
TGGATAGATGGACTGCTCACTGCTC
LOC_Os02g45810
Os.49863.1.S1_at--633--3811Chr02:27900748..27900772 (25 bp)
CTCCTGCATTTAGTCCTGTAGTCAT
LOC_Os02g45810
Os.49863.1.S1_at--847--10051Chr02:27900730..27900754 (25 bp)
TAGTCATTTTCGTTTTTCTGCTCGT
LOC_Os02g45810
Os.49863.1.S1_at--923--10211Chr02:27900698..27900722 (25 bp)
TATTCATCGCGCTAACTTTCTTCAT
LOC_Os02g45810
Target Sequence 
GCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTTTTCTGAAG
GATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGTGTCTTATGTTGGTGATCTCTTGATATAT
TCATTACTCTACTCTCCTGCTAAGCTACGGAAAGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTG
AACTTTGTGGAAGTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTGATGAATGG
ATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTTTTCTGCTCGTGCTGTGCTATTCATCGCG
CTAACTTTCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis