Browse Element(s) Details


OsAffx.16430.1.S1_at

Description gb:NM_187134.1
DB_XREF= gi:34901353
GEN=OSJNBb0015I22.28
TID=OsAffx.16430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0015I22.28 (OSJNBb0015I22.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g268804/11hypothetical protein
LOC_Os02g458402/11retrotransposon protein, putative, unclassified
LOC_Os04g048502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g320602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g349201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26860OsAffx.28610.5.S1_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.5.S1_x_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_s_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_at10/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_x_at9/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_at7/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_x_at6/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_x_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.3.S1_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860Os.4760.1.S1_at1/117+15541009..15544183hypothetical protein
LOC_Os07g26870Os.28495.1.S1_at11/117+15558647..15560238Cytochrome P450 family protein, expressed
LOC_Os07g26880OsAffx.16430.2.S1_s_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.2.S1_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.1.S1_at4/117+15564784..15565477hypothetical protein
LOC_Os07g26890NANA7+15570092..15570316hypothetical protein
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative
LOC_Os07g26910Os.21854.1.S1_at2/117+15586962..15589233hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16430.1.S1_at--558--5471Chr07:15564142..15564166 (25 bp)
GAACTCGCTTGCAACATTCTTTTCA
NONE
OsAffx.16430.1.S1_at--950--711Chr07:15564166..15564190 (25 bp)
ATGATTCAGCCTTGGGTGGACATTC
NONE
OsAffx.16430.1.S1_at--272--7511NONE
GTGGACATTCTGCTCTTTATGGAGT
NONE
OsAffx.16430.1.S1_at--303--4131Chr07:15565258..15565281 (24 bp)
CGCAGTGCTGGACCGATGGCTCATA
LOC_Os07g26880
OsAffx.16430.1.S1_at--797--6231Chr07:15565271..15565295 (25 bp)
GATGGCTCATACCTCAGAACAACGA
LOC_Os07g26880
OsAffx.16430.1.S1_at--662--2211Chr07:15565289..15565313 (25 bp)
ACAACGAGCCTATAGTTCAGTGGAA
LOC_Os07g26880
OsAffx.16430.1.S1_at--371--7611Chr07:15565322..15565346 (25 bp)
GGGAAAATTTACCTCTCTCAGCAGC
LOC_Os07g26880
OsAffx.16430.1.S1_at--1011--10451Chr07:15565370..15565866 (25 bp)
TTACCAAGAGAGATCGACACCCCTG
NONE
OsAffx.16430.1.S1_at--318--87359Chr11:17701794..17701813 (20 bp)
TGTCAATCAACCCTAGGCCAGGAAC
NONE
OsAffx.16430.1.S1_at--786--10091Chr07:15565878..15565902 (25 bp)
TAGGCCAGGAACATCCTCTCTTAGC
NONE
OsAffx.16430.1.S1_at--65--50164Chr11:27424714..27424738 (25 bp)
GCATGTGCCATGCTGTGTAACCACT
NONE
Target Sequence 
GAACTCGCTTGCAACATTCTTTTCATGATTCAGCCTTGGGTGGACATTCTGCTCTTTATGGAGTACCTCCACCTCTATTG
GCTGAATCCCTGCTTCCAAGTTCTCCTTTTGCTGATGCCCGGAACAAAGAAGAAGAAAGAGCTGTTGTTACTGTTGCTGT
TAAATCTAGCCTCCTCAAAGCTCAAGCTCGCATGAAACACTTTGCAGATATGCATCGTAGTGAAAGAGTACGCAGTGCTG
GACCGATGGCTCATACCTCAGAACAACGAGCCTATAGTTCAGTGGAAGATCCATTGGGAAAATTTACCTCTCTCAGCAGC
CACCTGGGAGGATGCTGCATTCATTACCAAGAGAGATCGACACCCCTGTCAATCAACCCTAGGCCAGGAACATCCTCTCT
TAGCCACGTCCGTGCGTCCAGTGCCAGCGCATGTGCCATGCTGTGTAACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis