Browse Element(s) Details


OsAffx.16430.2.S1_s_at

Description tigr:9635.m02591
TID=OsAffx.16430.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2688011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26860OsAffx.28610.5.S1_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.5.S1_x_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_s_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_at10/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_x_at9/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_at7/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_x_at6/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_x_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.3.S1_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860Os.4760.1.S1_at1/117+15541009..15544183hypothetical protein
LOC_Os07g26870Os.28495.1.S1_at11/117+15558647..15560238Cytochrome P450 family protein, expressed
LOC_Os07g26880OsAffx.16430.2.S1_s_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.2.S1_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.1.S1_at4/117+15564784..15565477hypothetical protein
LOC_Os07g26890NANA7+15570092..15570316hypothetical protein
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative
LOC_Os07g26910Os.21854.1.S1_at2/117+15586962..15589233hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16430.2.S1_s_at--206--1751Chr07:15564819..15564843 (25 bp)
ACCTCTATTGGCTGAATCCCTGCTT
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--1136--10211Chr07:15564824..15564848 (25 bp)
TATTGGCTGAATCCCTGCTTCCAAG
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--763--8931Chr07:15564839..15564863 (25 bp)
TGCTTCCAAGTTCTCCTTTTGCTGA
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--385--2831Chr07:15564846..15564870 (25 bp)
AAGTTCTCCTTTTGCTGATGCCCGG
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--73--9251Chr07:15564852..15564876 (25 bp)
TCCTTTTGCTGATGCCCGGAACAAA
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--728--6671Chr07:15564901..15564925 (25 bp)
GTTGCTGTTAAATCTAGCCTCCTCA
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--142--10491Chr07:15564908..15564932 (25 bp)
TTAAATCTAGCCTCCTCAAAGCTCA
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--350--451Chr07:15564912..15564936 (25 bp)
ATCTAGCCTCCTCAAAGCTCAAGCT
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--1162--3231Chr07:15564931..15564955 (25 bp)
CAAGCTCGCATGAAACACTTTGCAG
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--786--5531Chr07:15564942..15564966 (25 bp)
GAAACACTTTGCAGATATGCATCGT
LOC_Os07g26880
OsAffx.16430.2.S1_s_at--646--3431Chr07:15564953..15564977 (25 bp)
CAGATATGCATCGTAGTGAAAGAGT
LOC_Os07g26880
Target Sequence 
ACCTCTATTGGCTGAATCCCTGCTTCCAAGTTCTCCTTTTGCTGATGCCCGGAACAAAGAAGAAGAAAGAGCTGTTGTTA
CTGTTGCTGTTAAATCTAGCCTCCTCAAAGCTCAAGCTCGCATGAAACACTTTGCAGATATGCATCGTAGTGAAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16430.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis