Browse Element(s) Details


OsAffx.28611.1.S1_at

Description tigr:9635.m02593
TID=OsAffx.28611.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Melibiase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2690011/11Alpha-galactosidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26870Os.28495.1.S1_at11/117+15558647..15560238Cytochrome P450 family protein, expressed
LOC_Os07g26880OsAffx.16430.2.S1_s_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.2.S1_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.1.S1_at4/117+15564784..15565477hypothetical protein
LOC_Os07g26890NANA7+15570092..15570316hypothetical protein
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative
LOC_Os07g26910Os.21854.1.S1_at2/117+15586962..15589233hypothetical protein
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004557molecular_functionalpha-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28611.1.S1_at--217--5151Chr07:15581295..15581319 (25 bp)
GCAACAGCTGGAGGACCACCGGCGA
LOC_Os07g26900
OsAffx.28611.1.S1_at--104--8391Chr07:15581315..15581339 (25 bp)
GGCGACATCAATGACTCATGGGCCA
LOC_Os07g26900
OsAffx.28611.1.S1_at--103--9631Chr07:15581330..15581506 (25 bp)
TCATGGGCCAGCATGCTGAGCAACA
LOC_Os07g26900
OsAffx.28611.1.S1_at--256--4271Chr07:15581543..15581652 (25 bp)
CCGGCGGCTGGAACGATCCTGACAT
LOC_Os07g26900
OsAffx.28611.1.S1_at--452--2591Chr07:15581642..15581663 (22 bp)
AACGATCCTGACATGCTGGAGGTCG
LOC_Os07g26900
OsAffx.28611.1.S1_at--1054--1171Chr07:15581688..15581712 (25 bp)
AGTACGTCGTGCACATCAGCCTTTG
LOC_Os07g26900
OsAffx.28611.1.S1_at--553--2091Chr07:15581700..15581724 (25 bp)
ACATCAGCCTTTGGGCGATTGCCAA
LOC_Os07g26900
OsAffx.28611.1.S1_at--579--8651Chr07:15581711..15581843 (25 bp)
TGGGCGATTGCCAAGGCTCCTCTGA
LOC_Os07g26900
OsAffx.28611.1.S1_at--661--7111Chr07:15581906..15582032 (25 bp)
GTCATCGCCATTAACCAAGATCCAT
LOC_Os07g26900
OsAffx.28611.1.S1_at--832--6351Chr07:15582026..15582050 (25 bp)
GATCCATTGGGCGTCCAGGGAAAGA
LOC_Os07g26900
OsAffx.28611.1.S1_at--657--4591Chr07:15582296..15582453 (25 bp)
GCGAAGAACGTCTGGCTGCACGCGA
LOC_Os07g26900
Target Sequence 
GCAACAGCTGGAGGACCACCGGCGACATCAATGACTCATGGGCCAGCATGCTGAGCAACATCGACAGCAACGACGCCTCC
GCCAGCTACGCCAAGCCCGGCGGCTGGAACGATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTA
CGTCGTGCACATCAGCCTTTGGGCGATTGCCAAGGCTCCTCTGATCATCGGGTGCGACGTGAGGAGTATCTCCAGGGAGA
CGATGGAGATCCTCTCCAACCCTGAAGTCATCGCCATTAACCAAGATCCATTGGGCGTCCAGGGAAAGAAAGTCAGGAAG
TACGACAACGAAATCGAGGTATGGGCAGGGCCGCTCTCCCAGCAGAGGACGGCGGTGCTGCTGCTGAACCGCGGCGCCAC
GGGCAGCCGGCAGATCACGGCGGCGTGGCAGGACATCGGCGTCGGCCCCGGCGTCGCCGTCGAGGCGAAGAACGTCTGGC
TGCACGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis