Browse Element(s) Details


OsAffx.28610.4.S1_s_at

Description tigr:9634.m01691
TID=OsAffx.28610.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1680011/11hypothetical protein
LOC_Os07g2686011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16760Os.27435.1.S1_x_at4/116+9708411..9709587hypothetical protein
LOC_Os06g16770OsAffx.4851.1.S1_x_at11/116+9711602..9711993expressed protein
LOC_Os06g16780OsAffx.26306.1.S1_s_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16780OsAffx.26306.2.S1_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative
LOC_Os06g16820OsAffx.27678.1.S1_at11/116+9742064..9742879hypothetical protein
LOC_Os06g16830NANA6+9743691..9744196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16840OsAffx.30536.1.S1_x_at1/116+9749163..9752141transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28610.4.S1_s_at--1086--8352Chr07:15543364..15543388 (25 bp)
GGCGGTGCAGAGTGCGTCGGCTCGA
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--558--6112Chr07:15543373..15543397 (25 bp)
GAGTGCGTCGGCTCGATCGGCTTCA
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--890--7292Chr07:15543375..15543399 (25 bp)
GTGCGTCGGCTCGATCGGCTTCAGT
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--324--9152Chr07:15543376..15543400 (25 bp)
TGCGTCGGCTCGATCGGCTTCAGTC
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--961--4012Chr07:15543378..15543402 (25 bp)
CGTCGGCTCGATCGGCTTCAGTCGA
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--20--8332Chr07:15543382..15543406 (25 bp)
GGCTCGATCGGCTTCAGTCGAACCT
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--52--9392Chr07:15543385..15543409 (25 bp)
TCGATCGGCTTCAGTCGAACCTCGA
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--1122--6392Chr07:15543387..15543411 (25 bp)
GATCGGCTTCAGTCGAACCTCGATG
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--535--492Chr07:15543388..15543412 (25 bp)
ATCGGCTTCAGTCGAACCTCGATGG
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--560--9452Chr07:15543389..15543413 (25 bp)
TCGGCTTCAGTCGAACCTCGATGGG
LOC_Os07g26860
OsAffx.28610.4.S1_s_at--800--10492Chr07:15543394..15543418 (25 bp)
TTCAGTCGAACCTCGATGGGGTCGA
LOC_Os07g26860
Target Sequence 
GGCGGTGCAGAGTGCGTCGGCTCGATCGGCTTCAGTCGAACCTCGATGGGGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28610.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis